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Sample GSM209898 Query DataSets for GSM209898
Status Public on Mar 01, 2008
Title expression profile of human Schwann cells cultured from a HMSN-Lom patient (NDRG1 R148X mutant)
Sample type SAGE
Anchor NlaIII
Tag Count 39729
Tag Length 10
 
Source name in vitro cultured Schwann cells
Organism Homo sapiens
Characteristics Schwann cells cultured in vitro, from HMSN-Lom patient with missense mutation of NDRG1 (R148X)
Extracted molecule total RNA
Extraction protocol Trizol extracted RNA from cultured cells
 
Description this sample has also been profiled using Agilent microarrays
 
Submission date Jul 12, 2007
Last update date Nov 19, 2008
Contact name Anneloor L.M.A. ten Asbroek
E-mail(s) a.l.tenasbroek@amc.uva.nl
Phone +31 20 566 3746
Organization name Academic Medical Center
Lab Neurogenetics Laboratory
Street address Meibergdreef 9
City Amsterdam
ZIP/Postal code 1105 AZ
Country Netherlands
 
Platform ID GPL4
Series (1)
GSE2529 human peripheral nervous system SAGE

Data table header descriptions
TAG tag sequence
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 80 2013.64
AAAAAAAAAC 3 75.51
AAAAAAAAAG 2 50.34
AAAAAAAAGA 3 75.51
AAAAAAAAGG 1 25.17
AAAAAAACTG 1 25.17
AAAAAAATGA 1 25.17
AAAAAACCCA 4 100.68
AAAAAACTCC 2 50.34
AAAAAACTTT 1 25.17
AAAAAAGAAA 1 25.17
AAAAAAGAGA 1 25.17
AAAAAAGCTG 1 25.17
AAAAAAGGAG 1 25.17
AAAAAATGCA 1 25.17
AAAAAATGTT 1 25.17
AAAAACCAGG 1 25.17
AAAAACCATA 2 50.34
AAAAACCATC 1 25.17
AAAAACCCTA 1 25.17

Total number of rows: 14657

Table truncated, full table size 274 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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