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Sample GSM21 Query DataSets for GSM21
Status Public on Jan 24, 2001
Title NHGRI_SRS-3
Sample type RNA
 
Channel 1
Source name unknown
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 73 160 91 178 8018504 51779.1 15783.2 153 3520.9 633.9 73 160 91 178 6937471 43970.6 20271.2 143 3874.1 322.8 153 1.178 0.0248963 99.000 0.515 2.401 1.112 0.189 1.059
2 679 169 697 187 585173 2742.1 995.5 91 3353.4 562.2 679 169 697 187 921094 6063.2 2912.3 93 3531.5 272.2 104 0.452 -0.3904063 99.000 0.515 2.401 1.112 0.189 0.407
3 109 160 127 178 265724 2085.6 924.8 36 3450.4 581.9 109 160 127 178 1044693 17882.4 12023.8 54 3882.0 302.1 56 0.117 -0.9788113 99.000 0.515 2.401 1.112 0.189 0.105
4 715 169 733 187 519324 1887.0 806.4 65 3254.9 551.6 715 169 733 187 561794 2042.7 666.3 104 3519.6 279.6 109 0.924 -0.0803993 99.000 0.515 2.401 1.112 0.189 0.831
5 146 160 164 178 1198771 7533.7 2512.8 117 3464.2 597.5 146 160 164 178 1682401 11521.3 5225.4 103 3913.6 299.0 117 0.654 -0.2306233 99.000 0.515 2.401 1.112 0.189 0.588
6 751 169 769 187 7336793 49111.1 19299.2 146 3294.5 593.3 751 169 769 187 7809867 52271.1 17727.5 147 3513.7 295.5 148 0.940 -0.0731433 99.000 0.515 2.401 1.112 0.189 0.845
7 182 160 200 178 1186780 7716.5 2024.5 113 3479.5 609.6 182 160 200 178 1348144 8845.5 3111.5 106 3872.8 284.8 114 0.872 -0.1051303 99.000 0.515 2.401 1.112 0.189 0.785
8 788 169 806 187 5141301 40774.3 17797.1 125 3168.4 540.6 788 169 806 187 3654450 27759.1 14772.3 111 3475.5 288.4 125 1.469 0.1209033 99.000 0.515 2.401 1.112 0.189 1.321
9 219 160 237 178 3155530 21310.3 7033.1 128 3536.4 660.6 219 160 237 178 5003023 35495.1 16116.0 129 3898.7 358.9 135 0.600 -0.2676063 99.000 0.515 2.401 1.112 0.189 0.540
10 824 169 842 187 273830 1044.4 661.1 0 3168.4 561.9 824 169 842 187 309272 1322.3 423.7 73 3435.7 270.8 73 0.790 -0.1487423 99.000 0.515 2.401 1.112 0.189 0.710
11 255 160 273 178 3910013 29409.9 10993.4 121 3447.4 624.3 255 160 273 178 4290500 32240.4 14139.7 122 3814.2 331.0 127 0.912 -0.0856573 99.000 0.515 2.401 1.112 0.189 0.821
12 860 169 878 187 108755 1027.0 568.9 0 3155.9 550.7 860 169 878 187 121620 1262.2 395.0 34 3415.5 258.7 34 0.814 -0.1354893 99.000 0.515 2.401 1.112 0.189 0.732
13 66 773 84 791 644646 3920.4 1730.1 85 3575.5 565.4 66 773 84 791 845994 5876.5 3363.4 68 3960.6 305.8 94 0.667 -0.2218493 99.000 0.515 2.401 1.112 0.189 0.600
14 680 772 698 790 2809799 26281.0 12580.1 100 3295.8 601.5 680 772 698 790 3023898 28411.6 13985.8 103 3418.9 249.1 103 0.925 -0.0798773 99.000 0.515 2.401 1.112 0.189 0.832
15 102 773 120 791 1590520 11235.8 3995.0 109 3628.9 601.1 102 773 120 791 2257001 17078.1 6710.8 109 4015.3 314.1 115 0.658 -0.2276783 99.000 0.515 2.401 1.112 0.189 0.592
16 716 772 734 790 759961 5407.1 1778.4 88 3328.0 604.6 716 772 734 790 764866 5347.1 1564.2 93 3444.5 271.0 95 1.011 -0.0409593 99.000 0.515 2.401 1.112 0.189 0.910
17 139 773 157 791 816850 5194.2 1890.4 94 3684.6 639.5 139 773 157 791 997623 6783.0 3505.3 85 4060.7 335.4 100 0.766 -0.1617813 99.000 0.515 2.401 1.112 0.189 0.689
18 753 772 771 790 993058 7282.1 3011.3 91 3282.3 564.5 753 772 771 790 924281 6343.5 2726.2 100 3489.3 276.7 102 1.148 0.0141003 99.000 0.515 2.401 1.112 0.189 1.033
19 175 773 193 791 711953 4695.9 1885.7 78 3680.0 650.0 175 773 193 791 702774 4201.0 1940.2 81 4067.0 344.4 93 1.118 0.0025983 99.000 0.515 2.401 1.112 0.189 1.006
20 790 772 808 790 904487 5390.4 1844.5 107 3306.6 582.5 790 772 808 790 853235 4610.0 1744.9 103 3594.1 303.4 112 1.169 0.0220163 99.000 0.515 2.401 1.112 0.189 1.052

Total number of rows: 8192

Table truncated, full table size 1320 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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