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Sample GSM210553 Query DataSets for GSM210553
Status Public on Sep 22, 2008
Title NIL WKY 4
Sample type RNA
 
Source name Neurointermediate lobe
Organism Rattus norvegicus
Characteristics Strain: Wistar-Kyoto
Gender: Male
Age: 10-12 weeks
Tissue: Neurointermediate lobe of the Pituitary
Extracted molecule total RNA
Extraction protocol Tissue was dissected in an RNase free manner and stored in RNAlater (Ambion) at -20C for no more than 1 month. Homogenisation in QIAzol was conducted mechanically and the aqueous phase separated using a PLG column (Eppendorf). RNA was further purified using RNeasy minelute cleanup kit (Qiagen). RNA quality was confirmed using nanodrop and bioanylizer 2100 (Agilent).
Label MessageAmpII aRNA Amplification kit (Ambion)
Label protocol Protocol available at http://www.AMBION.com/catalog/CatNum.php?1753
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Description Sample represents the Neurointermediate lobe of the Pituitary from 5 untreated Wistar-kyoto rats
Data processing GCOS version 1.2
 
Submission date Jul 16, 2007
Last update date Aug 14, 2011
Contact name DAVID MURPHY
Organization name University of Bristol
Department Medicine and Dentistry
Lab Laboratories for Integrative Neuroscience and Endocrinolgy
Street address Whitson Street
City Bristol
State/province AVON
ZIP/Postal code BS1 3NY
Country United Kingdom
 
Platform ID GPL1355
Series (1)
GSE8491 The Transcriptome of the rat hypothalamo-neurohypophyseal system is highly strain-dependant

Data table header descriptions
ID_REF
VALUE GCOS calculated signal intensity
ABS_CALL Indication of the transcript being present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 123.752 P 9.4506e-05
AFFX-BioB-M_at 241.344 P 4.42873e-05
AFFX-BioB-3_at 145.055 P 4.42873e-05
AFFX-BioC-5_at 460.701 P 5.16732e-05
AFFX-BioC-3_at 450.402 P 4.42873e-05
AFFX-BioDn-5_at 908.675 P 5.16732e-05
AFFX-BioDn-3_at 2031.89 P 5.16732e-05
AFFX-CreX-5_at 4978.58 P 5.16732e-05
AFFX-CreX-3_at 5447.08 P 4.42873e-05
AFFX-DapX-5_at 5.09236 A 0.39692
AFFX-DapX-M_at 6.00147 A 0.617401
AFFX-DapX-3_at 0.726042 A 0.993813
AFFX-LysX-5_at 6.45677 A 0.368438
AFFX-LysX-M_at 5.00737 A 0.60308
AFFX-LysX-3_at 8.16564 A 0.0726999
AFFX-PheX-5_at 0.684313 A 0.997444
AFFX-PheX-M_at 0.761278 A 0.904333
AFFX-PheX-3_at 2.43325 A 0.699394
AFFX-ThrX-5_at 11.21 A 0.262827
AFFX-ThrX-M_at 8.27882 A 0.287743

Total number of rows: 31099

Table truncated, full table size 948 Kbytes.




Supplementary file Size Download File type/resource
GSM210553.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM210553.CHP.gz 165.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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