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Sample GSM210561 Query DataSets for GSM210561
Status Public on Sep 22, 2008
Title PVN WISTAR CONTROL 2
Sample type RNA
 
Source name Paraventricular nucleus Wistar
Organism Rattus norvegicus
Characteristics Strain: Wistar
Gender: Male
Age: 10-12 weeks
Tissue: Hypothalamic Paraventricular nucleus
Extracted molecule total RNA
Extraction protocol Tissue was dissected in an RNase free manner and stored in RNAlater (Ambion) at -20C for no more than 1 month. Homogenisation in QIAzol was conducted mechanically and the aqueous phase separated using a PLG column (Eppendorf). RNA was further purified using RNeasy minelute cleanup kit (Qiagen). RNA quality was confirmed using nanodrop and bioanylizer 2100 (Agilent).
Label MessageAmpII aRNA Amplification kit (Ambion)
Label protocol Protocol available at http://www.AMBION.com/catalog/CatNum.php?1753
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Description Sample represents the paraventricular nucleus from 5 untreated Wistar rats
Data processing GCOS version 1.2
 
Submission date Jul 16, 2007
Last update date Aug 14, 2011
Contact name DAVID MURPHY
Organization name University of Bristol
Department Medicine and Dentistry
Lab Laboratories for Integrative Neuroscience and Endocrinolgy
Street address Whitson Street
City Bristol
State/province AVON
ZIP/Postal code BS1 3NY
Country United Kingdom
 
Platform ID GPL1355
Series (1)
GSE8491 The Transcriptome of the rat hypothalamo-neurohypophyseal system is highly strain-dependant

Data table header descriptions
ID_REF
VALUE GCOS calculated signal intensity
ABS_CALL Indication of the transcript being present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 74.6063 P 0.000445901
AFFX-BioB-M_at 102.173 P 4.42873e-05
AFFX-BioB-3_at 50.1803 P 0.000445901
AFFX-BioC-5_at 254.821 P 8.14279e-05
AFFX-BioC-3_at 244.742 P 0.000146581
AFFX-BioDn-5_at 438.7 P 9.4506e-05
AFFX-BioDn-3_at 1161.14 P 7.00668e-05
AFFX-CreX-5_at 2948.46 P 5.16732e-05
AFFX-CreX-3_at 3138.09 P 4.42873e-05
AFFX-DapX-5_at 2.02581 A 0.48511
AFFX-DapX-M_at 4.87268 A 0.5
AFFX-DapX-3_at 2.61776 A 0.824672
AFFX-LysX-5_at 0.408961 A 0.772364
AFFX-LysX-M_at 5.78728 A 0.275146
AFFX-LysX-3_at 7.52228 P 0.0429619
AFFX-PheX-5_at 0.611759 A 0.976071
AFFX-PheX-M_at 0.820612 A 0.783476
AFFX-PheX-3_at 6.38807 A 0.5
AFFX-ThrX-5_at 4.47136 A 0.631562
AFFX-ThrX-M_at 7.14689 A 0.300606

Total number of rows: 31099

Table truncated, full table size 945 Kbytes.




Supplementary file Size Download File type/resource
GSM210561.CEL.gz 2.8 Mb (ftp)(http) CEL
GSM210561.CHP.gz 165.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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