|
| Status |
Public on Apr 01, 2017 |
| Title |
knockin (Amphotericin B treated) [56587-KAB6] |
| Sample type |
RNA |
| |
|
| Source name |
KAB6
|
| Organism |
Mus musculus |
| Characteristics |
background strain: C57BL/6
tissue: Esophagus
genotype: Kinase-dead IKKa knockin
treatment: amphotericin B
|
| Treatment protocol |
Kinase-dead IKKa knockin mice (KA mice) were treated with amphotericin B for three months.
|
| Growth protocol |
All mice were housed under ACUC guidelines
|
| Extracted molecule |
total RNA |
| Extraction protocol |
TRIzol reagent was used for total RNA extraction
|
| Label |
biotin
|
| Label protocol |
Labeling was performed according to manufacturer specifications.
|
| |
|
| Hybridization protocol |
Hybridization was performed according to manufacturer specifications.
|
| Scan protocol |
Scanning was performed according to manufacturer specifications.
|
| Description |
Esophagus from Amphotericin B treated KA mouse
|
| Data processing |
Raw data from .CEL files was read into R using the oligo Bioconductor package and processed using the rma function with default settings.
|
| |
|
| Submission date |
Apr 07, 2016 |
| Last update date |
Apr 01, 2017 |
| Contact name |
Sean Davis |
| E-mail(s) |
sdavis2@mail.nih.gov
|
| Phone |
301-435-2652
|
| Organization name |
National Cancer Institute
|
| Lab |
Genetics Branch
|
| Street address |
37 Convent Drive, Room 6138
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platform ID |
GPL1261 |
| Series (1) |
| GSE80005 |
Gene expression profile in mouse esophageal squamous cell carcinoma |
|
