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Sample GSM2109968 Query DataSets for GSM2109968
Status Public on Apr 01, 2017
Title knockin (untreated) [KA9]
Sample type RNA
 
Source name KA9
Organism Mus musculus
Characteristics background strain: C57BL/6
tissue: ESCC
genotype: Kinase-dead IKKa knockin
treatment: none
Treatment protocol Kinase-dead IKKa knockin mice (KA mice) were treated with amphotericin B for three months.
Growth protocol All mice were housed under ACUC guidelines
Extracted molecule total RNA
Extraction protocol TRIzol reagent was used for total RNA extraction
Label biotin
Label protocol Labeling was performed according to manufacturer specifications.
 
Hybridization protocol Hybridization was performed according to manufacturer specifications.
Scan protocol Scanning was performed according to manufacturer specifications.
Description ESCC from untreated KA mouse
Data processing Raw data from .CEL files was read into R using the oligo Bioconductor package and processed using the rma function with default settings.
 
Submission date Apr 07, 2016
Last update date Apr 01, 2017
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1261
Series (1)
GSE80005 Gene expression profile in mouse esophageal squamous cell carcinoma

Data table header descriptions
ID_REF
VALUE rma-normalized log2 expression

Data table
ID_REF VALUE
1415670_at 8.924456102
1415671_at 10.70997176
1415672_at 10.73365842
1415673_at 7.361291731
1415674_a_at 8.364779968
1415675_at 7.99810018
1415676_a_at 10.61816355
1415677_at 9.909866777
1415678_at 9.422607294
1415679_at 10.05209811
1415680_at 7.853694451
1415681_at 8.910062342
1415682_at 7.861489546
1415683_at 9.903929367
1415684_at 7.660639851
1415685_at 7.855692238
1415686_at 8.834656473
1415687_a_at 11.84052573
1415688_at 9.716826248
1415689_s_at 8.35515066

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM2109968_KA9_rpt_Mouse430_2_.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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