|
Status |
Public on Apr 01, 2017 |
Title |
knockin (untreated) [KA9] |
Sample type |
RNA |
|
|
Source name |
KA9
|
Organism |
Mus musculus |
Characteristics |
background strain: C57BL/6 tissue: ESCC genotype: Kinase-dead IKKa knockin treatment: none
|
Treatment protocol |
Kinase-dead IKKa knockin mice (KA mice) were treated with amphotericin B for three months.
|
Growth protocol |
All mice were housed under ACUC guidelines
|
Extracted molecule |
total RNA |
Extraction protocol |
TRIzol reagent was used for total RNA extraction
|
Label |
biotin
|
Label protocol |
Labeling was performed according to manufacturer specifications.
|
|
|
Hybridization protocol |
Hybridization was performed according to manufacturer specifications.
|
Scan protocol |
Scanning was performed according to manufacturer specifications.
|
Description |
ESCC from untreated KA mouse
|
Data processing |
Raw data from .CEL files was read into R using the oligo Bioconductor package and processed using the rma function with default settings.
|
|
|
Submission date |
Apr 07, 2016 |
Last update date |
Apr 01, 2017 |
Contact name |
Sean Davis |
E-mail(s) |
sdavis2@mail.nih.gov
|
Phone |
301-435-2652
|
Organization name |
National Cancer Institute
|
Lab |
Genetics Branch
|
Street address |
37 Convent Drive, Room 6138
|
City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20892 |
Country |
USA |
|
|
Platform ID |
GPL1261 |
Series (1) |
GSE80005 |
Gene expression profile in mouse esophageal squamous cell carcinoma |
|