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Sample GSM2114 Query DataSets for GSM2114
Status Public on Jun 27, 2002
Title A549_CL1004__NSCLC
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name A549_CL1004__NSCLC
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp3304
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 2127 2120 38 2730 2804 2800 3783 3689 .611 0 .684 0 0 .811 1012 52 11 19 39 47
2 2032 1992 2439 2663 2592 3502 3295 .591 0 1.25 0 0 0 .651 845 52 10 18 47 55
3 1876 1840 2297 2441 2384 3221 3104 .606 0 1 0 0 0 .62 705 52 10 18 56 64
4 1784 1752 1984 2316 2296 3102 2681 .757 0 .655 3 1 0 .5 710 52 10 18 65 73
5 1748 1712 2078 2273 2240 3027 2808 .525 0 1.438 0 0 0 .491 705 52 10 18 74 82
6 1768 1704 2080 2272 2216 2994 2810 .738 0 1.313 1 1 0 .342 699 52 10 18 82 90
7 1819 1704 2101 2304 2232 3016 2839 .779 0 1.333 0 0 0 .323 699 52 10 18 91 99
8 1815 1704 15 2303 55 2311 2248 3037 75 3112 .738 0 2.322 2.051 0 1 .273 .2 3.667 5 .327 705 52 10 18 100 108 2.322
9 1797 1672 45 2306 58 2312 2248 3037 79 3116 .773 0 .812 1.556 0 0 .776 .57 1.289 1.756 .32 705 52 10 18 109 117 .812
10 1724 1656 100 1945 2283 2240 3027 2628 .358 0 1 0 0 .324 699 52 10 18 117 125
11 1691 1624 1792 2226 2208 2983 2421 .536 0 1.077 0 1 0 .533 699 52 10 18 126 134
12 1610 1584 1900 2169 2168 2929 2567 .606 0 2 0 0 0 1.146 705 52 10 18 135 143
13 1574 1552 1957 2106 2088 2821 2644 .552 0 1.6 1 0 0 .882 705 52 10 18 144 152
14 1534 1512 1716 2049 2040 2756 2318 .693 0 1.5 0 0 0 1.362 699 52 10 18 152 160
15 1511 1488 1689 2024 2008 2713 2282 .516 0 1.22 0 1 0 .964 699 52 10 18 161 169
16 1489 1472 1394 2000 1992 2691 1883 .735 0 1 0 0 0 1.406 705 52 10 18 170 178
17 1494 1448 1913 1992 1960 2648 2585 .545 0 1.529 0 1 0 .461 705 52 10 18 179 187
18 1488 1432 9 1883 1983 1952 2637 2544 .507 0 .647 0 1 .437 699 52 10 18 187 195
19 1472 1416 1533 1956 1928 2605 2071 .566 0 1 0 0 0 .625 699 52 10 18 196 204
20 1442 1392 1528 1896 1856 2508 2064 .464 0 1.333 1 1 0 .529 705 52 10 18 205 213

Total number of rows: 9984

Table truncated, full table size 1174 Kbytes.




Supplementary data files not provided
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