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Sample GSM2122 Query DataSets for GSM2122
Status Public on Jun 27, 2002
Title OVCAR-3_CL6001_OVARIAN
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name OVCAR-3_CL6001_OVARIAN
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2835
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1558 1248 622 1198 640 445 -13 432 .957 0 .333 0 0 0 1.559 1213 52 22 30 35 43
2 1610 1256 643 1286 648 450 -3 447 .957 0 .556 0 1 0 1.56 1069 52 22 30 43 51
3 1626 1264 631 1324 640 445 -6 439 .957 0 .609 0 0 0 1.563 933 52 22 30 52 60
4 1683 1256 640 1564 640 445 0 445 .923 0 .667 0 0 0 1.678 931 52 22 30 61 69
5 1375 1264 615 984 632 439 -12 428 .918 0 .615 0 0 0 3.188 931 52 22 30 70 78
6 1388 1256 595 1016 632 439 -26 414 .915 0 1.154 0 0 0 3.137 925 52 22 30 78 86
7 1397 1256 262 689 57 1022 632 439 40 479 .58 0 -2.725 .733 3 7 4.596 6.612 .218 .151 1.234 931 52 22 30 87 95 -2.725
8 1339 1256 67 731 91 765 640 445 63 508 .776 0 -.083 .939 1 13 .736 1.059 1.358 .944 .921 931 52 22 30 96 104 -.083
9 1328 1264 220 990 342 755 648 450 238 688 .807 0 .112 1.13 19 40 .643 .925 1.555 1.081 1.039 931 52 22 30 105 113 .112
10 1339 1264 242 1054 406 770 648 450 282 733 .842 0 .222 1.333 21 46 .596 .857 1.678 1.166 1.158 925 52 22 30 113 121 .222
11 1361 1272 103 749 93 808 656 456 65 521 .83 0 -.672 .891 9 15 1.108 1.593 .903 .628 1.094 925 52 22 30 122 130 -.672
12 1354 1272 7 713 49 811 664 462 34 496 .82 0 2.283 .943 1 11 .143 .205 7 4.866 1.142 931 52 22 30 131 139 2.283
13 1333 1256 774 118 793 656 456 82 538 .86 0 2.375 1 13 0 1.2 931 52 22 30 140 148
14 1293 1256 693 37 742 656 456 26 482 .732 0 .864 0 3 0 .947 925 52 22 30 148 156
15 1418 1240 9 709 53 1026 656 456 37 493 .961 0 2.033 .895 0 0 .17 .244 5.889 4.094 1.99 925 52 22 30 157 165 2.033
16 1403 1232 612 1003 648 450 -25 425 .962 0 .357 0 0 0 1.995 931 52 22 30 166 174
17 1394 1224 624 1000 632 439 -6 434 .96 0 .588 0 0 0 1.997 931 52 22 30 175 183
18 1461 1224 625 1154 632 439 -5 434 .961 0 3.5 0 1 0 1.997 925 52 22 30 183 191
19 1297 1208 561 843 632 439 -49 390 .943 0 1 0 0 0 2.05 925 52 22 30 192 200
20 1281 1208 624 808 632 439 -6 434 .942 0 .522 0 0 0 1.942 931 52 22 30 201 209

Total number of rows: 9984

Table truncated, full table size 1226 Kbytes.




Supplementary data files not provided
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