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GEO accession:
Sample GSM21223
Query DataSets for GSM21223
Status
Public on Jul 19, 2004
Title
Moderate 1020
Sample type
RNA
Source name
hippocampal CA1 tissue
Organism
Homo sapiens
Characteristics
ref #: 1020
group: Moderate
nft: 15.8
braak: 6
age: 79
mmse: 18
Sex: F
pmi: 3
Extracted molecule
total RNA
Description
Moderate AD (MMSE14-19); correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
Keywords = bioinformatics
Keywords = gene expression
Keywords = memory
Keywords = synaptic plasticity
Keywords = myelin
Keywords = inflamation
Keywords = aging
Keywords = behavior
Keywords = Alzheimer's
Keywords = microarray
Submission date
Apr 08, 2004
Last update date
Jan 19, 2017
Contact name
Eric M Blalock
E-mail(s)
eric.blalock@uky.edu
Phone
859-323-8033
Organization name
University of Kentucky
Department
Molecular and Biomedical Pharmacology
Lab
Blalock
Street address
800 Rose St.
City
Lexington
State/province
KY
ZIP/Postal code
40475
Country
USA
Platform ID
GPL96
Series (1)
GSE1297
Incipient Alzheimer's Disease: Microarray Correlation Analyses
Relations
Affiliated with
GSM697327
Data table header descriptions
ID_REF
Affymetrix gene ID
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
556.7
P
0.325
AFFX-BioB-M_at
1586.8
P
0.082
AFFX-BioB-3_at
570.3
P
0.391
AFFX-BioC-5_at
1848.5
P
0.105
AFFX-BioC-3_at
1902.2
P
0.476
AFFX-BioDn-5_at
1564.5
P
0.274
AFFX-BioDn-3_at
11909.6
P
0.039
AFFX-CreX-5_at
20565
P
1
AFFX-CreX-3_at
28625.4
P
1
AFFX-DapX-5_at
76.5
A
0.792
AFFX-DapX-M_at
17.4
A
0.911
AFFX-DapX-3_at
5.2
A
0.753
AFFX-LysX-5_at
43.8
A
0.156
AFFX-LysX-M_at
12.2
A
0.884
AFFX-LysX-3_at
4
A
0.035
AFFX-PheX-5_at
4.9
A
0.793
AFFX-PheX-M_at
10.3
A
0.2
AFFX-PheX-3_at
21.5
A
0.208
AFFX-ThrX-5_at
12.4
A
0.18
AFFX-ThrX-M_at
9.1
A
0.445
Total number of rows:
22283
Table truncated, full table size
530 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM21223.cel.gz
3.4 Mb
(ftp)
(http)
CEL
GSM21223.exp.gz
471 b
(ftp)
(http)
EXP
GSM21223.rpt.gz
969 b
(ftp)
(http)
RPT
GSM21223.txt.gz
199.4 Kb
(ftp)
(http)
TXT
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