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Sample GSM2132 Query DataSets for GSM2132
Status Public on Jun 27, 2002
Title A498_CL9013_RENAL
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name A498_CL9013_RENAL
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2828
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1458 1440 119 591 615 600 909 895 .19 0 .192 1 0 .081 1131 52 14 22 48 56
2 1457 1440 92 592 619 608 921 896 .172 0 .204 0 0 .087 987 52 14 22 56 64
3 1449 1432 30 574 616 600 909 869 .24 0 .222 0 0 .132 851 52 14 22 65 73
4 1434 1424 8 569 608 600 909 862 .211 0 .333 0 0 .102 849 52 14 22 74 82
5 1407 1408 579 602 592 896 877 .153 0 .6 0 0 0 .067 849 52 14 22 83 91
6 1389 1384 38 597 5 596 592 896 8 904 .003 0 -2.248 .375 0 0 7.6 4.75 .132 .211 .002 843 52 14 22 91 99 -2.248
7 1380 1376 3 592 8 591 584 884 12 896 .061 0 2 .482 0 0 .375 .25 2.667 4 .034 849 52 14 22 100 108 2
8 1383 1376 34 561 583 576 872 850 .085 0 .167 0 0 .04 849 52 14 22 109 117
9 1379 1368 17 584 16 577 568 860 24 884 .05 0 .497 .667 0 0 1.063 .708 .941 1.412 .023 849 52 14 22 118 126 .497
10 1389 1376 326 709 141 577 568 860 214 1074 .676 0 -.607 .464 11 30 2.312 1.523 .433 .656 .353 843 52 14 22 126 134 -.607
11 1400 1384 463 721 153 576 568 860 232 1092 .36 0 -.997 .415 3 7 3.026 1.996 .33 .501 .109 843 52 14 22 135 143 -.997
12 1400 1384 18 569 1 571 568 860 2 862 .327 0 -3.17 .478 0 0 18 9 .056 .111 .146 849 52 14 22 144 152 -3.17
13 1400 1384 11 550 572 560 848 833 .388 0 .448 0 0 .167 849 52 14 22 153 161
14 1394 1376 113 591 31 566 560 848 47 895 .558 0 -1.266 .184 3 3 3.645 2.404 .274 .416 .473 843 52 14 22 161 169 -1.266
15 1393 1376 91 562 2 581 560 848 3 851 .444 0 -4.923 .276 0 0 45.5 30.333 .022 .033 .345 843 52 14 22 170 178 -4.923
16 1382 1368 25 572 12 583 560 848 18 866 .473 0 -.474 .4 0 1 2.083 1.389 .48 .72 .394 849 52 14 22 179 187 -.474
17 1376 1368 24 556 580 560 848 842 .419 0 .233 0 0 .363 849 52 14 22 188 196
18 1375 1360 31 565 5 581 560 848 8 856 .428 0 -1.954 1 0 1 6.2 3.875 .161 .258 .391 843 52 14 22 196 204 -1.954
19 1377 1368 42 521 572 560 848 789 .049 0 .167 0 0 .04 843 52 14 22 205 213
20 1364 1352 132 561 9 560 552 836 14 850 .44 0 -3.237 .333 3 1 14.667 9.429 .068 .106 .099 849 52 14 22 214 222 -3.237

Total number of rows: 9984

Table truncated, full table size 1229 Kbytes.




Supplementary data files not provided
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