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Status |
Public on Jun 30, 2016 |
Title |
Testis_trcp(1;14)_2 |
Sample type |
RNA |
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Source name |
Testicular biopsy
|
Organism |
Sus scrofa |
Characteristics |
semen parameters: Oligo-astheno-teratospermic chromosomal status: (2n=38,XY,trcp(1;14)
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Extracted molecule |
total RNA |
Extraction protocol |
Total RNA from three independant testicular biopsies was extracted using the Nucleospin RNA kit (Macherey-Nagel). Quantity and quality of RNA was evaluated by NanoDrop dosage and Bioanalyser analysis (Agilent Technologies).
|
Label |
Cy3
|
Label protocol |
Label, hybridation , scan and data extraction were performed by the GeT-Biopuces platform following manufacturer's intruction. Samples were then marked by Cyanine-3 fluorochrome and converted in cDNA before hybridization on the 60K customized chip from Agilent (Voillet et al., 2014).
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Hybridization protocol |
Microarray hybridation oven according to manufacturer's instruction
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Scan protocol |
Image analysis using the Feature Extraction software (Agilent).
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Description |
Gene expression analysis in infertile boars
|
Data processing |
Data were filtered to keep only spots of sufficient intensity and quality for at least 2 out of 3 technical replicates. Intensity values were log-transformed and normalized by the quantile normalization method. Differential analysis was then performed using the Limma package (Bioconductor). Threshold parameters were defined as follow: maximal adjusted p-value (Benjamini& Hochberg) of 0.01 and minimal log-fold change (lfc) of 2.
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Submission date |
Apr 26, 2016 |
Last update date |
Jun 30, 2016 |
Contact name |
Herve Acloque |
E-mail(s) |
herve.acloque@toulouse.inra.fr
|
Organization name |
INRA
|
Department |
Animal Genetics
|
Lab |
GenPhySE UMR1388
|
Street address |
24 chemin de Borde Rouge
|
City |
Castanet-Tolosan |
ZIP/Postal code |
31326 |
Country |
France |
|
|
Platform ID |
GPL20779 |
Series (1) |
GSE80693 |
Meiotic behavior analysis of a balanced reciprocal translocation in the pig |
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