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Sample GSM2146 Query DataSets for GSM2146
Status Public on Jun 27, 2002
Title HCC-2998 (CL4002) COLON
Sample type RNA
 
Channel 1
Source name Reference Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HCC-2998 (CL4002) COLON
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators.
Scanning Software: unknown
Software version: unknown
Lot batch = dtp2827a
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1320 41 776 776 994 994 -.04 0 1 0 0 0 -.02 25 33 62 70
2 1320 2 781 5 776 994 7 1001 -.04 0 1.807 1.56 0 0 .4 .286 2.5 3.5 -.02 25 33 70 78 1.807
3 1320 7 764 -4 768 984 -5 979 .03 0 .47 0 0 0 .01 25 33 79 87
4 1336 3 764 4 760 974 5 979 -.08 0 .737 .87 0 0 .75 .6 1.333 1.667 -.04 25 33 88 96 .737
5 1336 -46 710 -50 760 974 -64 910 .13 0 2 0 0 0 .06 25 33 97 105
6 1344 -29 801 33 768 984 42 1026 .04 0 1.14 0 0 0 .09 25 33 105 113
7 1344 87 763 -5 768 984 -6 978 .33 0 .86 0 0 0 .12 25 33 114 122
8 1336 1 759 23 736 943 30 973 .32 0 4.907 1.06 0 0 .043 .033 23 30 .16 25 33 123 131 4.907
9 1336 39 724 -12 736 943 -15 928 .09 0 .92 0 0 0 .05 25 33 132 140
10 1336 486 1030 286 744 953 367 1320 .82 0 -.405 .79 0 0 1.699 1.324 .588 .755 .46 25 33 140 148 -.405
11 1352 48 735 7 728 933 9 942 -.12 0 -2.415 1.17 0 0 6.857 5.333 .146 .188 -.05 25 33 149 157 -2.415
12 1352 -27 723 -5 728 933 -7 926 .06 0 1.04 0 0 0 .03 25 33 158 166
13 1336 -2 725 -3 728 933 -4 929 .09 0 .68 0 0 0 .05 25 33 167 175
14 1352 -17 738 2 736 943 3 946 -.09 0 .81 0 0 0 -.06 25 33 175 183
15 1344 46 743 -1 744 953 -1 952 -.03 0 1 0 0 0 -.01 25 33 184 192
16 1344 -2 734 -10 744 953 -12 941 -.23 0 2.08 0 0 0 -.12 25 33 193 201
17 1344 -47 731 -13 744 953 -16 937 -.32 0 .62 0 0 0 -.18 25 33 202 210
18 1352 71 746 2 744 953 3 956 .26 0 -4.565 .83 0 0 35.5 23.667 .028 .042 .05 25 33 210 218 -4.565
19 1352 63 697 -47 744 953 -60 893 -.01 0 .56 0 0 0 -.01 25 33 219 227
20 1360 -29 699 -69 768 984 -88 896 .08 0 .62 0 0 0 .03 25 33 228 236

Total number of rows: 9984

Table truncated, full table size 1038 Kbytes.




Supplementary data files not provided
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