|
| Status |
Public on Jun 01, 2016 |
| Title |
SLE patient with lupus nephritis-06 |
| Sample type |
RNA |
| |
|
| Source name |
peripheral blood mononuclear cellÂ
|
| Organism |
Homo sapiens |
| Characteristics |
Sex: Female
age: 41y
tissue: blood
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated from PBMC by standard phenol–chloroform extraction using Trizol reagent (Invitrogen Life Technologies, Carlsbad, CA) according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
9703627057_D
replicate 6
|
| Data processing |
The data were normalised using quantile normalisation with Genespring software
|
| |
|
| Submission date |
May 19, 2016 |
| Last update date |
Jun 01, 2016 |
| Contact name |
yun lian |
| E-mail(s) |
yun.lian@utsouthwestern.edu
|
| Organization name |
UT Southwestern Medical Center
|
| Street address |
5323 Harry Hines Blvd.
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390 |
| Country |
USA |
| |
|
| Platform ID |
GPL10558 |
| Series (2) |
| GSE81622 |
Whole genome transcription and DNA methylation analysis of peripheral blood mononuclear cells identified aberrant gene regulation pathways in systemic lupus erythematosus [expression] |
| GSE82221 |
Whole genome transcription and DNA methylation analysis of peripheral blood mononuclear cells identified aberrant gene regulation pathways in systemic lupus erythematosus |
|
