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Sample GSM219998 Query DataSets for GSM219998
Status Public on Nov 15, 2007
Title urban 07
Sample type RNA
 
Source name Total leukocytes
Organism Homo sapiens
Characteristics SEX: Female
Lifestyle: Urban
Extracted molecule total RNA
Extraction protocol Total leukocytes were isolated from 9 ml whole blood and its total RNA stabilized and extracted using the LeukoLOCK™ Total RNA Isolation System (Ambion, Austin, TX)
Label Cy3
Label protocol cRNA labelling using Cy3 was performed using the Illumina TotalPrep RNA Amplification kit (Ambion, Austin, TX) following the manufacturer’s instructions.
 
Hybridization protocol Illumina hybridization recommencded protocol was followed.
Scan protocol The BeadChips were imaged using Illumina’s BeadArray Reader
Description none
Data processing The raw intensities were extracted using the Gene Expression Module in Illumina’s BeadStudio software
 
Submission date Aug 22, 2007
Last update date Aug 14, 2011
Contact name Youssef Idaghdour
E-mail(s) yidaghd@ncsu.edu
Organization name NCSU
Department Genetics
Lab Gibson
Street address South Gardner Hall
City Raleigh
State/province NC
ZIP/Postal code 27695
Country USA
 
Platform ID GPL5764
Series (1)
GSE8847 The Effect of Lifestyle on Gene Expression in Moroccan Amazighs

Data table header descriptions
ID_REF
VALUE log2 transformed, median-centered

Data table
ID_REF VALUE
1 -0.336
2 -1.128
3 2.401
4 -0.993
5 -0.542
6 0.451
7 -0.625
8 1.025
9 -0.784
10 4.322
11 2.161
12 -1.377
13 -0.475
14 1.438
15 -1.106
16 1.427
17 0.401
18 -0.296
19 -0.928
20 -0.81

Total number of rows: 10173

Table truncated, full table size 113 Kbytes.




Supplementary file Size Download File type/resource
GSM219998.TXT.gz 190.3 Kb (ftp)(http) TXT
Processed data included within Sample table

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