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Status |
Public on Sep 01, 2016 |
Title |
245B 50 Replicate 2 |
Sample type |
RNA |
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Source name |
EndoC-betaH1 cell line (human beta cell line)
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Organism |
Homo sapiens |
Characteristics |
cell line: EndoC-betaH1 replicate: Replicate 2 lentivirus: HI-LNC85sh2
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Treatment protocol |
Five non-targeting and four amiRNAs targeting each of 5 TF and 25 lncRNAs were designed using
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Growth protocol |
EndoC-betaH1 were maintained as previously described (Ravassard et al.,
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Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
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Label |
biotin
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Label protocol |
Fragmented and labeled ss-cDNA was prepared according to Affymetrix WT PLUS Reagent Kit user guide
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Hybridization protocol |
Following fragmentation and terminal labeling, 5.2ug of ss-cDNA were hybridized for 16hr at 45C on GeneChip Human Transcriptome Array 2.0. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
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Scan protocol |
GeneChips were scanned using the Affymetrix GeneCHip Scanner 3000 System.
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Data processing |
The data were analyzed with Expression Console Software using RMA analysis.
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Submission date |
Jun 22, 2016 |
Last update date |
Sep 01, 2016 |
Contact name |
ildem akerman |
Organization name |
University of Birmingham
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Department |
IMSR
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Lab |
Akerman Lab
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Street address |
BR Tower, 3rd Floor, Room 333, Edgbaston,
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City |
birmingham |
ZIP/Postal code |
B15 2TT |
Country |
United Kingdom |
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Platform ID |
GPL17586 |
Series (1) |
GSE83619 |
HI-LNC RNA knockdown in EndoC-betaH1 cell using lentiviral ami-aRNAs |
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