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GEO accession:
Sample GSM225567
Query DataSets for GSM225567
Status
Public on Aug 22, 2008
Title
SmadDKD15I
Sample type
RNA
Channel 1
Source name
Smad 1+5 double morphant
Organism
Danio rerio
Characteristics
Smad 1+5 double morphant, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy5
Label protocol
Nimblegen
Channel 2
Source name
Wildtype
Organism
Danio rerio
Characteristics
Wildtype, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy3
Label protocol
Nimblegen
Hybridization protocol
Nimblegen
Scan protocol
Nimblegen
Description
set I
Data processing
Data normalized using NimbleScan. Log2 ratios (experimental/wildtype) determined using R analysis software.
Submission date
Aug 29, 2007
Last update date
Aug 22, 2008
Contact name
Lisa J. McReynolds
E-mail(s)
lmcreyno@aecom.yu.edu
Organization name
Albert Einstein College of Medicine
Department
Developmental and Molecular Biology
Lab
Todd Evans
Street address
1300 Morris Park Ave. Chanin 501
City
Bronx
State/province
NY
ZIP/Postal code
10461
Country
USA
Platform ID
GPL5746
Series (1)
GSE8903
Comparsion of Smad1 and Smad5 Dependent Transcript Profiles in Zebrafish
Data table header descriptions
ID_REF
VALUE
log2 ratio
CH1_SIGNAL
experimental sample raw data
CH2_SIGNAL
wildtype sample raw data
Data table
ID_REF
VALUE
CH1_SIGNAL
CH2_SIGNAL
5035_0075_0565
-0.263130782345166
15085.44
19626.11
5035_0745_0643
-0.205172578847
14688
18033
5035_0216_0442
-0.190534216642313
10613.22
12840.89
5035_0619_1017
-0.223307758216847
10181.44
12728.89
5035_0747_0249
-0.289640953824102
6373.67
8514.89
5035_0291_0311
-0.291817750297264
7287.22
9756.56
5035_0718_0604
-0.191688465199636
19309.67
23389.67
5035_0284_0796
-0.210188837394629
10511.56
12970.33
5035_0063_0183
-0.195943781656919
7020.56
8540.22
5035_0224_0342
0.233014854509165
41439.55
32826
5035_0440_0748
0.181046962423845
58266.89
48617.67
5035_0457_0959
0.21389589240394
54455.33
43969
5035_0649_0143
0.216627012419318
52715.22
42447.89
5035_0709_0297
0.207925262780859
48771
39615.11
5035_0050_0226
0.129895349621734
59426.33
52187.45
5035_0196_0742
0.222607012857580
32710.22
26182.22
5035_0055_0551
0.353255988400855
15761.89
11071.11
5035_0682_0404
0.182693413455319
11893.89
9907.89
5035_0508_0900
-0.149192778578014
37046.55
43007.22
5035_0538_0712
-0.177525778822518
25402.55
30337.22
Total number of rows:
389307
Table truncated, full table size
18421 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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