|
| Status |
Public on Sep 28, 2016 |
| Title |
T980447 |
| Sample type |
genomic |
| |
|
| Source name |
Gastric Primary Tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue subtype: Gastric primary tumor tissue
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was isolated using Qiagen Blood & Cell Culture DNA Mini Kit according to the manufacturer's protocol
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina protocol - Infinium HD Methylation protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
|
| |
|
| Hybridization protocol |
Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
|
| Scan protocol |
BeadChips were scanned using the iScan system
|
| Description |
X980447T
|
| Data processing |
Methylation β-values were calculated and background corrected using the methylumi R BioConductor package.
Normalization was performed using the BMIQ method (watermelon package in R).
|
| |
|
| Submission date |
Aug 11, 2016 |
| Last update date |
Sep 28, 2016 |
| Contact name |
Aditi Qamra |
| E-mail(s) |
qamraa99@gis.a-star.edu.sg
|
| Organization name |
GIS
|
| Street address |
60 Biopolis Street, Genome, #02-01
|
| City |
Singapore |
| ZIP/Postal code |
138672 |
| Country |
Singapore |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE85464 |
Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity [methylation] |
| GSE85467 |
Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity |
|
