|
Status |
Public on Nov 30, 2016 |
Title |
Circulating cell-free DNA from patient 5, in treatment 3 |
Sample type |
genomic |
|
|
Source name |
patient sample
|
Organism |
Homo sapiens |
Characteristics |
tissue: circulating cell-free DNA
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Qiagen manufactures procedure; specifically QIAsymphony Circulating DNA Kit and Rneasy MIniPrep. DNA quality and quantity was controled by BioAnalyzer and Nanodrop.
|
Label |
Biotin
|
Label protocol |
affymetrix manufactures procedure
|
|
|
Hybridization protocol |
affymetrix manufactures procedure
|
Scan protocol |
affymetrix manufactures procedure
|
Description |
Hybridized to OncoScan
|
Data processing |
BioDiscovery software NEXUS 7.5 data represents the SNP data of cfDNA analysed by OncoScan and tumor DNA analysed by CytoScanHD
|
|
|
Submission date |
Aug 23, 2016 |
Last update date |
Nov 30, 2016 |
Contact name |
Olga Østrup |
E-mail(s) |
olga.oestrup@regionh.dk
|
Phone |
004561695675
|
Organization name |
Copenhagen University Hospital (Rigshospitalet)
|
Department |
Genomic Medicine
|
Street address |
Blegdamsvej 9
|
City |
Copenhagen |
ZIP/Postal code |
2100 |
Country |
Denmark |
|
|
Platform ID |
GPL21558 |
Series (1) |
GSE85937 |
Genome profiling of free circulating tumor DNA by oncoscan and comparison to profiles in tumor biopsies evaluated by cytoscan |
|