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Sample GSM23 Query DataSets for GSM23
Status Public on Jan 24, 2001
Title NHGRI_TC-1376
Sample type RNA
 
Channel 1
Source name melanoma, ileum
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: distal ileum
Patient sex: male
Patient age: 30
Passage number: 3
p16 mutation status: ND
Invasive ability: ND
Vasculogenic mimicry: ND
Gel contraction: ND
Cell motility: ND
Scratch wound (%): 21

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 113 154 131 172 4381362 25544.8 12960.1 176 534.7 198.5 113 154 131 172 5961057 31613.6 17519.4 149 3868.8 260.6 176 0.808 -0.1668533 99.000 0.470 2.998 1.187 0.218 0.681
2 131 154 149 172 2409271 14702.7 7082.4 164 545.9 200.1 131 154 149 172 4102483 22087.9 11820.2 141 3877.2 257.8 166 0.666 -0.2510373 99.000 0.470 2.998 1.187 0.218 0.561
3 149 154 167 172 8372 642.8 62.1 15 553.2 199.0 149 154 167 172 31319 588.1 110.5 0 3886.0 253.8 15 1.093 -0.0357403 99.000 0.470 2.998 1.187 0.218 0.921
4 167 154 185 172 561775 4119.8 1626.6 120 561.7 198.6 167 154 185 172 824108 2999.3 1518.8 100 3868.2 241.3 128 1.374 0.0633333 99.000 0.470 2.998 1.187 0.218 1.157
5 186 154 204 172 1941152 12888.2 5789.5 152 592.1 215.0 186 154 204 172 1257801 4854.5 2701.0 115 3880.3 251.2 152 2.655 0.3494723 99.000 0.470 2.998 1.187 0.218 2.236
6 204 154 222 172 301169 1741.1 688.9 123 611.7 222.1 204 154 222 172 775353 2179.2 1001.2 120 3878.2 255.0 136 0.799 -0.1719853 99.000 0.470 2.998 1.187 0.218 0.673
7 222 154 240 172 701626 4588.9 1364.6 137 608.4 215.1 222 154 240 172 1081648 4134.0 1732.8 123 3878.2 261.9 143 1.110 -0.0291883 99.000 0.470 2.998 1.187 0.218 0.935
8 240 154 258 172 3225061 21186.3 8707.3 154 604.6 214.5 240 154 258 172 4772723 28354.9 14375.5 135 3893.2 277.2 156 0.747 -0.2013493 99.000 0.470 2.998 1.187 0.218 0.629
9 258 154 276 172 4810755 30617.4 13609.0 162 621.3 235.6 258 154 276 172 3109223 16315.6 8972.5 119 3874.2 270.2 162 1.877 0.1989323 99.000 0.470 2.998 1.187 0.218 1.581
10 277 154 295 172 3914129 25637.9 13195.6 157 631.4 236.0 277 154 295 172 5036275 29919.1 18777.1 132 3881.4 277.0 157 0.857 -0.1414633 99.000 0.470 2.998 1.187 0.218 0.722
11 295 154 313 172 1707413 11567.8 5795.4 146 628.0 233.7 295 154 313 172 2873744 16657.6 9975.1 116 3869.2 268.3 148 0.694 -0.2328443 99.000 0.470 2.998 1.187 0.218 0.585
12 313 153 331 171 3808876 27376.9 12207.5 143 629.5 233.9 313 153 331 171 3805979 24122.1 14303.8 117 3863.1 273.2 144 1.135 -0.0195423 99.000 0.470 2.998 1.187 0.218 0.956
13 105 766 123 784 496273 4056.1 1635.1 104 539.0 204.7 105 766 123 784 691707 2593.5 1254.3 99 3811.2 247.2 116 1.564 0.1195863 99.000 0.470 2.998 1.187 0.218 1.317
14 123 766 141 784 20184 722.7 172.4 21 538.8 205.5 123 766 141 784 75759 948.7 383.9 11 3786.2 233.7 24 0.762 -0.1924653 99.000 0.470 2.998 1.187 0.218 0.642
15 141 766 159 784 2100268 16672.0 8597.0 130 543.3 204.2 141 766 159 784 2027467 12817.4 7742.2 93 3801.2 239.3 130 1.301 0.0398113 99.000 0.470 2.998 1.187 0.218 1.096
16 160 766 178 784 465354 3505.4 1479.9 108 541.2 200.6 160 766 178 784 2616403 18937.6 7609.9 114 3813.8 247.8 123 0.185 -0.8068753 99.000 0.470 2.998 1.187 0.218 0.156
17 178 766 196 784 576527 6312.7 3093.4 84 550.7 196.6 178 766 196 784 665449 4110.5 2460.0 71 3811.5 244.9 92 1.536 0.1119343 99.000 0.470 2.998 1.187 0.218 1.294
18 196 766 214 784 3729429 27464.7 12766.8 141 576.1 203.2 196 766 214 784 5079627 34359.3 19051.2 120 3833.4 254.5 141 0.799 -0.1719853 99.000 0.470 2.998 1.187 0.218 0.673
19 215 766 233 784 532430 4477.0 1975.9 106 593.7 204.1 215 766 233 784 764172 3424.6 1761.4 92 3853.2 266.5 113 1.307 0.0417873 99.000 0.470 2.998 1.187 0.218 1.101
20 233 766 251 784 5523970 38576.6 20879.6 148 600.5 208.4 233 766 251 784 7113648 46612.9 21761.4 128 3838.5 262.0 149 0.828 -0.1567673 99.000 0.470 2.998 1.187 0.218 0.697

Total number of rows: 8192

Table truncated, full table size 1296 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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