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Status
Public on Sep 30, 2016
Title
M Fibroblasts
Sample type
RNA
Source name
fibroblasts
Organism
Homo sapiens Characteristics
cell type: fibroblasts
Treatment protocol
none
Growth protocol
human pluripotent stem cell medium
Extracted molecule
total RNA
Extraction protocol
Qiagen DNA extraction kit
Label
Biotin (C, G), Dinitrophenyl (A, T)
Label protocol
Biotin (C, G), Dinitrophenyl (A, T), Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridisation protocol
Scan protocol
Standard Illumina scanning protocol for BeadChip Arrays
Data processing
The scanned data files were processed by GenomeStudio Genotyping module v1.9, using the cluster file HumanCytoSNP-12v2-1_H.egt provided by Illumina. Raw data was also uploaded to KaryoStudio (Illumina) for generation of karyotype reports (see publication).
Submission date
Sep 29, 2016
Last update date
Sep 30, 2016
Contact name
Sven Poths
E-mail(s)
sven.poths@med.uni-tuebingen.de Phone
+4970712972298
Organization name
University hospital Tuebingen
Department
Medical Genetics
Street address
Calwerstr. 7
City
Tuebingen
ZIP/Postal code
72076
Country
Germany
Platform ID
GPL8855 Series (1)
GSE87462 Genetic correction of a LRRK2 mutation in human iPSCs links parkinsonian neurodegeneration to ERK-dependent changes in gene expression.
Data table header descriptions ID_REF VALUE Genotype: AA,AB,BB,or NC (no call)
GC_SCORE Theta R B_Allele_Freq Log_R_Ratio
Data table ID_REF VALUE GC_SCORE Theta R B_Allele_Freq Log_R_Ratio cnvi0111185
NC
0
0.9672303
156.341
0.9919415
0.2611094
cnvi0111186
NC
0
0.04177745
0.5374051
0.01367106
-0.0443375
cnvi0111187
NC
0
0.9765937
167.869
0.9933227
0.2175176
cnvi0111188
NC
0
0.01083342
1.198.486
0
-0.0958565
cnvi0111189
NC
0
0.02963575
1.361.635
0
-0.110348
cnvi0111190
NC
0
0.03496629
0.4111298
0.00511523
-0.2188183
cnvi0111191
NC
0
0.05345281
0.4947295
0.02733159
-1.082.893
cnvi0111192
NC
0
0.02798953
0.9659015
0.003579574
-0.1842947
cnvi0111193
NC
0
0.00826104
1.560.683
0
0.5162313
cnvi0111194
NC
0
0.9785839
1.315.816
0.996369
0.1324972
cnvi0111195
NC
0
0.04613439
2.538.073
0.01109826
0.377043
cnvi0111196
NC
0
0.9860908
1.122.868
1
-0.1322143
cnvi0111197
NC
0
0.02270184
0.8310006
0.007535532
-0.2458654
cnvi0111198
NC
0
0.9708456
1.684.038
1
0.47824
cnvi0111199
NC
0
0.02145299
1.440.027
0.00254076
0.2592864
cnvi0111200
NC
0
0.9813233
0.8063116
1
-0.1496927
cnvi0111201
NC
0
0.03106404
1.062.393
0.008936092
0.3289599
cnvi0111202
NC
0
0.9062808
1.239.541
0.9705961
-0.0787507
cnvi0111203
NC
0
0.03602575
1.845.706
0.001776998
0.1148783
cnvi0111204
NC
0
0.9790516
1.215.526
0.9911448
0.0953154
301232 17917 Kbytes .Supplementary file Size Download File type/resource GSM2332038_5030743049_R01C01_Grn.idat.gz
1.9 Mb
(ftp) (http) IDAT
GSM2332038_5030743049_R01C01_Red.idat.gz
2.0 Mb
(ftp) (http) IDAT
Processed data included within Sample table
