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Sample GSM2338966 Query DataSets for GSM2338966
Status Public on Mar 08, 2017
Title Control (0 h) of wild-type rice leaves replicate 2
Sample type RNA
 
Source name Control (0 h) of wild-type rice leaves
Organism Oryza sativa
Characteristics cultivar: Nihonmasari
genotype: Wild-type
time point: Control (0 h)
tissue: leaves
Treatment protocol The leaf disks (6 mmϕ) were excised from the uppermost rice leaf blades of 1.5 month-old plants. Then the leaf disks were floated on water or 1 mM CuCl2.
Growth protocol Wild-type rice plants (Oryza sativa L., cv. Nihonmasari) and cpm2 mutants were grown in a glass house under natural daylight.
Extracted molecule total RNA
Extraction protocol RNeasy Plant Mini Kit (Qiagen)
Label Cy3
Label protocol Low RNA input Linear Amplification/Labeling Kit (Agilent)
 
Hybridization protocol Agilent protocol G4140-90040
Scan protocol Agilent Technologies Scanner G2505C US22502560
Description Biological replicate 2 of 3.
Data processing After data was analyzed by Fearure Extraction software (Agilent), data normalization was performed using Subio Platform with Basic Plug-in (Subio Inc).
 
Submission date Oct 06, 2016
Last update date Mar 08, 2017
Contact name Koji Miyamoto
E-mail(s) miyamoto@nasu.bio.teikyo-u.ac.jp
Phone +81-28-627-7566
Organization name Teikyo University
Department Department of Biosciences
Street address 1-1 Toyosatodai
City Utsunomiya
State/province Tochigi
ZIP/Postal code 320-8551
Country Japan
 
Platform ID GPL8852
Series (1)
GSE87698 Effect of copper (II) chloride treatment on rice leaves

Data table header descriptions
ID_REF
VALUE Normalized signal intensity (log 2)

Data table
ID_REF VALUE
Os01g0100100|COMBINER_EST|CI448596|0 -0.026100159
Os01g0100200|mRNA|AK059894|CDS+3'UTR 0.038065195
Os01g0100400|mRNA|AK101455|CDS+3'UTR -0.06161928
Os01g0100500|mRNA|AK067316|CDS+3'UTR -0.021518707
Os01g0100600|mRNA|AK121362|CDS+3'UTR -0.07653713
Os01g0100700|mRNA|AK059844|CDS+3'UTR 0.0756197
Os01g0100700|mRNA|AK121523|CDS+3'UTR 0.010567665
Os01g0100800|mRNA|AK122012|CDS+3'UTR -0.022101402
Os01g0100900|COMBINER_EST|CI015509|0 0.11049938
Os01g0101200|mRNA|AK067866|CDS+3'UTR 0.1792965
Os01g0101200|mRNA|AK104517|CDS+3'UTR 0.20612717
Os01g0101200|mRNA|AK104625|CDS+3'UTR 0.21223927
Os01g0101200|mRNA|AK104752|CDS+3'UTR 0.17011166
Os01g0101200|mRNA|AK119457|CDS+3'UTR 0.20318127
Os01g0101300|COMBINER_EST|CI016681|6 -0.11847496
Os01g0101600|mRNA|AK099952|CDS+3'UTR 0.18454552
Os01g0101600|mRNA|AK103820|CDS+3'UTR -0.008149147
Os01g0101600|mRNA|AK122118|CDS+3'UTR -0.021093369
Os01g0101700|COMBINER_EST|CI525185|3 0.036218643
Os01g0101800|mRNA|AK103498|CDS+3'UTR 0.054523945

Total number of rows: 42477

Table truncated, full table size 2012 Kbytes.




Supplementary file Size Download File type/resource
GSM2338966_US22502560_251524114826_S01_GE1_1105_Oct12_1_4.txt.gz 7.6 Mb (ftp)(http) TXT
Processed data included within Sample table
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