|
| Status |
Public on Oct 12, 2016 |
| Title |
sRNAs from Fusarium graminearum mutant strain Fgdicer1 Fgdicer2 at 5 days after sexual induction |
| Sample type |
SRA |
| |
|
| Source name |
Fungi culture
|
| Organism |
Fusarium graminearum |
| Characteristics |
strain: Fusarium graminearum Fgdicer1 Fgdicer2 mutant strain
|
| Growth protocol |
Fungal strain was grown at 25 ºC under near UV light for 5 days after sexual induction
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Illumina Small RNA Sample Preparation Kit v1 and sequenced with Illumina HiSeq2000.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
small RNA
|
| Data processing |
Removed adaptors. Sequences without adapters were discarded. Small RNA sequences that did not match tRNA and rRNA sequences were selected.
Genome_build: FGDB_v32 (obtained from ftp://ftpmips.gsf.de/fungi/FGDB/v32/)
Supplementary_files_format_and_content: tab-delimited text files include small RNA sequences and raw counts
|
| |
|
| Submission date |
Oct 11, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Hokyoung Son |
| E-mail(s) |
hogongi@gmail.com
|
| Organization name |
Seoul National University
|
| Department |
Center for Food and Bioconvergence
|
| Street address |
Daehak-dong, Gwanak-gu
|
| City |
Seoul |
| ZIP/Postal code |
151-921 |
| Country |
South Korea |
| |
|
| Platform ID |
GPL17573 |
| Series (1) |
| GSE87835 |
small RNA-seq analysis of transcriptomes at 5 day after sexual induction in Fusarium graminearum strains |
|
| Relations |
| BioSample |
SAMN05895051 |
| SRA |
SRX2238722 |
