|
Status |
Public on Oct 12, 2016 |
Title |
sRNAs from Fusarium graminearum mutant strain Fgdicer1 Fgdicer2 at 5 days after sexual induction |
Sample type |
SRA |
|
|
Source name |
Fungi culture
|
Organism |
Fusarium graminearum |
Characteristics |
strain: Fusarium graminearum Fgdicer1 Fgdicer2 mutant strain
|
Growth protocol |
Fungal strain was grown at 25 ÂșC under near UV light for 5 days after sexual induction
|
Extracted molecule |
total RNA |
Extraction protocol |
Illumina Small RNA Sample Preparation Kit v1 and sequenced with Illumina HiSeq2000.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
small RNA
|
Data processing |
Removed adaptors. Sequences without adapters were discarded. Small RNA sequences that did not match tRNA and rRNA sequences were selected. Genome_build: FGDB_v32 (obtained from ftp://ftpmips.gsf.de/fungi/FGDB/v32/) Supplementary_files_format_and_content: tab-delimited text files include small RNA sequences and raw counts
|
|
|
Submission date |
Oct 11, 2016 |
Last update date |
May 15, 2019 |
Contact name |
Hokyoung Son |
E-mail(s) |
hogongi@gmail.com
|
Organization name |
Seoul National University
|
Department |
Center for Food and Bioconvergence
|
Street address |
Daehak-dong, Gwanak-gu
|
City |
Seoul |
ZIP/Postal code |
151-921 |
Country |
South Korea |
|
|
Platform ID |
GPL17573 |
Series (1) |
GSE87835 |
small RNA-seq analysis of transcriptomes at 5 day after sexual induction in Fusarium graminearum strains |
|
Relations |
BioSample |
SAMN05895051 |
SRA |
SRX2238722 |