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Sample GSM2341690 Query DataSets for GSM2341690
Status Public on Oct 12, 2016
Title sRNAs from Fusarium graminearum mutant strain Fgago2 at 5 days after sexual induction
Sample type SRA
 
Source name Fungi culture
Organism Fusarium graminearum
Characteristics strain: Fusarium graminearum Fgago2 mutant strain
Growth protocol Fungal strain was grown at 25 ÂșC under near UV light for 5 days after sexual induction
Extracted molecule total RNA
Extraction protocol Illumina Small RNA Sample Preparation Kit v1 and sequenced with Illumina HiSeq2000.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description small RNA
Data processing Removed adaptors. Sequences without adapters were discarded. Small RNA sequences that did not match tRNA and rRNA sequences were selected.
Genome_build: FGDB_v32 (obtained from ftp://ftpmips.gsf.de/fungi/FGDB/v32/)
Supplementary_files_format_and_content: tab-delimited text files include small RNA sequences and raw counts
 
Submission date Oct 11, 2016
Last update date May 15, 2019
Contact name Hokyoung Son
E-mail(s) hogongi@gmail.com
Organization name Seoul National University
Department Center for Food and Bioconvergence
Street address Daehak-dong, Gwanak-gu
City Seoul
ZIP/Postal code 151-921
Country South Korea
 
Platform ID GPL17573
Series (1)
GSE87835 small RNA-seq analysis of transcriptomes at 5 day after sexual induction in Fusarium graminearum strains
Relations
BioSample SAMN05895049
SRA SRX2238724

Supplementary file Size Download File type/resource
GSM2341690_A2_processed.txt.gz 27.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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