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Sample GSM2344685 Query DataSets for GSM2344685
Status Public on Feb 01, 2017
Title Meningioma 8 [miRNA]
Sample type RNA
 
Source name Fresh-frozen meningioma tumor sample
Organism Homo sapiens
Characteristics tissue: Meningioma tumor
location: Tuberculum Sella meningioma
gender: Female
age: 65
Treatment protocol Not Applicable.
Growth protocol Meningial cells were cultured in T75 cell culture flasks in Meningeal Cell Medium.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Poly-A tailed RNA molecules were labeled with Biotin labeled DNA.
 
Hybridization protocol Hybridization was done for 20 hours as described in FlashTag Biotin HSR RNA Labeling Kit (Affymetrix).
Scan protocol GeneChips were scanned using the GeneAtlas Array scanner.
Description Sample name: 8
miRNA expression data from fresh-frozen meningioma tumor sample.
Data processing The resulting data were analyzed with Transcriptome Analysis Console 3 software.
 
Submission date Oct 13, 2016
Last update date Feb 01, 2017
Contact name Sukru Gulluoglu
E-mail(s) sgulluoglu@gmail.com
Organization name Yeditepe University
Street address Acibadem Mah. IStek vakfi binasi
City IStanbul
ZIP/Postal code 34587
Country Turkey
 
Platform ID GPL21572
Series (2)
GSE88719 miRNA expression data from meningioma samples and healthy meningial cell line
GSE88721 miRNA and gene expression data from meningioma samples and healthy meningial cell line
Relations
Reanalyzed by GSM2344700

Data table header descriptions
ID_REF
VALUE Log2 RMA signal
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
20500112 11.9511 8.72176e-16
20500113 1.46054 0.215143
20500114 1.37582 0.406156
20500115 12.945 8.72176e-16
20500116 1.61153 0.310537
20500117 12.0988 8.72176e-16
20500118 0.154906 0.842337
20500119 11.3686 8.72176e-16
20500120 0.86919 0.570614
20500121 11.6903 8.72176e-16
20500122 0.984575 0.727452
20500123 9.14387 2.67012e-14
20500124 1.01358 0.358738
20500125 0.723818 0.557786
20500126 4.00333 5.1375e-05
20500127 0.272818 0.821885
20500128 10.112 1.59012e-15
20500129 0.495642 0.755143
20500130 7.15368 7.83013e-11
20500131 2.61689 0.0912883

Total number of rows: 6658

Table truncated, full table size 172 Kbytes.




Supplementary file Size Download File type/resource
GSM2344685_mirM8.ga.cel.gz 731.4 Kb (ftp)(http) CEL
GSM2344685_mirM8.ga.gbmmenprojectmirna.rma-dabg.chp.gz 68.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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