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Sample GSM23474

Query DataSets for GSM23474

Status

Public on May 29, 2004

Title

Kidney outer medullary collecting duct

Sample type

SAGE

Anchor

Sau3A

Tag Count

20200

Tag Length

Source name

microdissected outer medullary collecting duct

Organism

Mus musculus

Extracted molecule

total RNA

Description

Library obtained from microdissected kidney outer medullary collecting duct from C57Bl6/J mice after 3 days potassium-depleted diet.The library was generated using Sau3A I as anchoring enzyme. Data are provided after removal of linker derived sequences.
Keywords = microdissection
Keywords = nephron
Keywords = SADE

Submission date

May 21, 2004

Last update date

Nov 19, 2008

Contact name

Alain Doucet

E-mail(s)

alain.doucet@bhdc.jussieu.fr

Phone

(33) 1 55 42 78 51

Organization name

Institut des Cordeliers

Department

Street address

City

Paris

ZIP/Postal code

75270

Country

France

Platform ID

GPL275

Series (1)

GSE1445

Effect of potassium-depleted diet on kidney

Data table header descriptions
TAG	Tag sequence
COUNT	Tag abundance
TPM	tags per million

Data table
TAG	COUNT	TPM
TGCTTCAATA	553	27376.24
GTGGCAGTGG	468	23168.32
AACAAATCTC	265	13118.81
AAACAACCCA	235	11633.66
AACTTATACA	223	11039.60
TTTATAATTT	172	8514.85
AACATTCCTT	159	7871.29
TTATAATTTG	132	6534.65
AAACTTTACC	120	5940.59
TAACCATAGC	109	5396.04
TGACTCCCTC	98	4851.49
CAGAAGCAGT	77	3811.88
TTAAAAAAAA	75	3712.87
CCACTGCACA	62	3069.31
CAGAAGAAGT	57	2821.78
ATTTATTTCA	56	2772.28
AAATAAAGTT	53	2623.76
ACTCTATTTT	49	2425.74
CGAGCATCTT	48	2376.24
GCTTTCAGCA	48	2376.24

Total number of rows: 9833

Table truncated, full table size 183 Kbytes.

Supplementary data files not provided