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Sample GSM23478

Query DataSets for GSM23478

Status

Public on May 29, 2004

Title

Kidney outer medullary collecting duct: Control

Sample type

SAGE

Anchor

Sau3A

Tag Count

19698

Tag Length

Source name

microdissected outer medullary collecting duct

Organism

Mus musculus

Extracted molecule

total RNA

Description

Library obtained from microdissected kidney outer medullary collecting duct from control C57Bl6/J mice .The library was generated using Sau3A I as anchoring enzyme. Data are provided after removal of linker derived sequences.
Keywords = microdissection
Keywords = nephron
Keywords = SADE

Submission date

May 21, 2004

Last update date

Nov 19, 2008

Contact name

Alain Doucet

E-mail(s)

alain.doucet@bhdc.jussieu.fr

Phone

(33) 1 55 42 78 51

Organization name

Institut des Cordeliers

Department

Street address

City

Paris

ZIP/Postal code

75270

Country

France

Platform ID

GPL275

Series (2)

GSE1445	Effect of potassium-depleted diet on kidney
GSE4729	The kidney collecting duct acid-base regulon

Data table header descriptions
TAG	Tag sequence
COUNT	Tag count
TPM	tags per million

Data table
TAG	COUNT	TPM
TGCTTCAATA	358	18174.43
GTGGCAGTGG	328	16651.44
AACTTATACA	223	11320.95
AAACAACCCA	177	8985.68
AACATTCCTT	163	8274.95
AACAAATCTC	155	7868.82
ATTTATTTCA	149	7564.22
AAACTTTACC	148	7513.45
TAACCATAGC	126	6396.59
TGGCAGTGGG	122	6193.52
CGAGCATCTT	103	5228.96
TTTATAATTT	90	4568.99
TTATAATTTG	88	4467.46
TGACTCCCTC	54	2741.40
AGCAAGCAGG	46	2335.26
ACCGACCGCA	40	2030.66
AACTTTACCA	39	1979.90
CCACTGCACA	38	1929.13
CAAGCAGCCC	36	1827.60
AAATAAAGTT	35	1776.83

Total number of rows: 10521

Table truncated, full table size 197 Kbytes.

Supplementary data files not provided