|
| Status |
Public on Feb 21, 2018 |
| Title |
day2_C9__IM793-711-516_S225 |
| Sample type |
SRA |
| |
|
| Source name |
primary resident immune cells in mouse kidney
|
| Organism |
Mus musculus |
| Characteristics |
strain: CD1
time: day 2
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Single cells were lysed following the Smartseq2 protocol
RNA libraries were prepared for sequencing using standard Illumina Nextera-XT protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
STAR for alignment
Piccard for marking duplicates
HTSeq for quantification
Genome_build: GRCm38
Supplementary_files_format_and_content: comma separated file including HTSeq count for each cell
|
| |
|
| Submission date |
Oct 19, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Wanxin Wang |
| E-mail(s) |
wanxinw@stanford.edu
|
| Phone |
4134373134
|
| Organization name |
Stanford Univeristy
|
| Lab |
Wanxin Wang
|
| Street address |
James H Clark Center, 318 Campus Drive, room E300
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (1) |
| GSE88953 |
Impact of hypothermic preservation of mouse kidney resident immune cells |
|
| Relations |
| BioSample |
SAMN05925237 |
| SRA |
SRX2252661 |
