|
Status |
Public on Feb 21, 2018 |
Title |
fresh_C3__IM793-703-505_S27 |
Sample type |
SRA |
|
|
Source name |
primary resident immune cells in mouse kidney
|
Organism |
Mus musculus |
Characteristics |
strain: CD1 time: fresh
|
Extracted molecule |
polyA RNA |
Extraction protocol |
Single cells were lysed following the Smartseq2 protocol RNA libraries were prepared for sequencing using standard Illumina Nextera-XT protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NextSeq 500 |
|
|
Data processing |
STAR for alignment Piccard for marking duplicates HTSeq for quantification Genome_build: GRCm38 Supplementary_files_format_and_content: comma separated file including HTSeq count for each cell
|
|
|
Submission date |
Oct 19, 2016 |
Last update date |
May 15, 2019 |
Contact name |
Wanxin Wang |
E-mail(s) |
wanxinw@stanford.edu
|
Phone |
4134373134
|
Organization name |
Stanford Univeristy
|
Lab |
Wanxin Wang
|
Street address |
James H Clark Center, 318 Campus Drive, room E300
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305 |
Country |
USA |
|
|
Platform ID |
GPL19057 |
Series (1) |
GSE88953 |
Impact of hypothermic preservation of mouse kidney resident immune cells |
|
Relations |
BioSample |
SAMN05925224 |
SRA |
SRX2252877 |