|
Status |
Public on Nov 20, 2017 |
Title |
db/db HSC, biological rep1 |
Sample type |
RNA |
|
|
Source name |
Hematopoietic stem cells from db/db mice
|
Organism |
Mus musculus |
Characteristics |
cell type: bone marrow hematopoietic stem cells genotype: leptin receptor mutation age: 3 month old mice
|
Growth protocol |
hematopoietic stem cells were sorted by flowcytometry
|
Extracted molecule |
total RNA |
Extraction protocol |
total RNA were isolated by mirVana miRNA isolation kit according to manufacturer's instructions (Applied Biosystems).
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20 ng total RNA
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|
|
Hybridization protocol |
Following fragmentation, 20 ng of total RNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
|
Scan protocol |
GeneChips were scanned by the Affymetrix Scanner 3000(Affymetrix).
|
Description |
microRNA expression in hematopoietic stem cells
|
Data processing |
The scanned images were analyzed using Expression Console Software (version 1.3.1 Affymetrix) affymetrix-algorithm-name = rma : dabg
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|
|
Submission date |
Nov 14, 2016 |
Last update date |
Nov 20, 2017 |
Contact name |
Lyne Khair |
Organization name |
UMASS MEDICAL SCHOOL
|
Department |
SURGERY
|
Street address |
368 PLANTATION STREET
|
City |
WORCESTER |
State/province |
MA |
ZIP/Postal code |
01605 |
Country |
USA |
|
|
Platform ID |
GPL21572 |
Series (1) |
GSE89842 |
Diabetes Impairs Wound-Healing by let-7d-3p-dependent DNMT1 Upregulation in Hematopoietic Stem Cells |
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