NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM241148 Query DataSets for GSM241148
Status Public on Nov 06, 2007
Title WT strain grown in YPD under Hypoxia (08-15-06_Philpott_YG_S98_11)
Sample type RNA
 
Source name 11-WT strain grown in YPD under Hypoxia
Organism Saccharomyces cerevisiae
Characteristics BY4742
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol standard Affymetrix procedure
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description Gene expression data from wild type strain under hypoxic conditions
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Nov 02, 2007
Last update date Aug 14, 2011
Contact name Olga Protchenko
E-mail(s) olgap@intra.niddk.nih.gov
Organization name National Institutes of health
Department NIDDK
Street address 10 Center Dr, Bldg.10-Rm.9B-05
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL90
Series (1)
GSE9514 Changes in gene expression in response to heme deficiency and hypoxia

Data table header descriptions
ID_REF Probe_set Id
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 1.7665584 A 0.973889
AFFX-MurIL10_at 1.6526325 A 0.8605175
AFFX-MurIL4_at 1.8017837 A 0.79426765
AFFX-MurFAS_at 8.119764 A 0.57403773
AFFX-BioB-5_at 291.14096 P 2.97E-04
AFFX-BioB-M_at 455.11346 P 5.17E-05
AFFX-BioB-3_at 408.42484 P 4.43E-05
AFFX-BioC-5_at 731.1926 P 4.43E-05
AFFX-BioC-3_at 541.2351 P 4.43E-05
AFFX-BioDn-5_at 811.2954 P 4.43E-05
AFFX-BioDn-3_at 4690.8755 P 4.43E-05
AFFX-CreX-5_at 6248.6025 P 4.43E-05
AFFX-CreX-3_at 9164.3125 P 4.43E-05
AFFX-BioB-5_st 7.242771 A 0.36843768
AFFX-BioB-M_st 17.423695 A 0.15673153
AFFX-BioB-3_st 35.856106 P 0.03367728
AFFX-BioC-5_st 7.8695264 A 0.5445875
AFFX-BioC-3_st 22.803608 A 0.102165125
AFFX-BioDn-5_st 58.27379 M 0.05844382
AFFX-BioDn-3_st 83.75847 P 8.57E-04

Total number of rows: 9335

Table truncated, full table size 272 Kbytes.




Supplementary file Size Download File type/resource
GSM241148.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap