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Sample GSM2424657 Query DataSets for GSM2424657
Status Public on Dec 13, 2016
Title 2-Control
Sample type RNA
 
Source name Human umbilical vein endothelial cells
Organism Homo sapiens
Characteristics cell type: Human umbilical vein endothelial cells
agent: PBS
time: 6hr
Treatment protocol HUVECs were cultured at a density of 5,000 cells/cm2 at 37 °C and starved overnight. Subsequently, they were incubated with ANG protein (final concentration 1 μg/ml ) or PBS for 6 hr.
Growth protocol Human umbilical vein endothelial cells (HUVECs), passages 3 to 8. HUVECs were cultured in modified endothelial cell growth medium containing 52% M199 medium (Life Technologies), 36% Human Endothelial-SFM (Life Technologies), 10% fetal bovine serum (Life Technologies) and 15 μg/ml endothelial cell growth supplement (Millipore).
Extracted molecule total RNA
Extraction protocol Collect cells with trypsin and washed with PBS, then resuspend in PBS at a density of 2×10E7/ml. Take 10 ul cell suspension and lyse in 90 ul lysis buffer (Tris 15 mM, NaCl 10 mM, MgCl2 3 mM, NP-40 0.3%) for 10 min on ice, and then heat at 99°C for 10 min. Sit the lysate on ice after heating. Take 6 ul lysate as the reverse transcription template. Reverse transcription was performed using Human MegaPlex RT Primer pools. cDNA was amplified using human MegaPlex PreAmp Primer Pools and PreAmp Master mix.The amplified samples were loaded into Taqman microRNA arrays Pool A (377 miRNAs) and pool B (373 miRNAs). Analysed using the 7900 Real Time PCR System (Applied Biosystems)
Label FAM
Label protocol n/a
 
Hybridization protocol n/a
Scan protocol n/a
Description Control
Data processing Ct values were calculated by SDS 1.2 software (Applied Biosystems) and normalized to MammU6 (miRNA) housekeeping Ct values and expressed as 2-(Ct[microRNA]—Ct[U6])
Fold Change worksheet reports test/control (i.e., ANG/Control) ratios.
 
Submission date Dec 12, 2016
Last update date Dec 13, 2016
Contact name Chunhua Weng
E-mail(s) chweng@zju.edu.cn
Organization name Zhejiang University
Department School of Medicine
Street address 866 Yuhang-Tang Road
City Hangzhou
ZIP/Postal code 310058
Country China
 
Platform ID GPL16566
Series (1)
GSE92256 MicroRNA expression profile of human umbilical vein endothelial cells treated with Angiogenin (ANG)

Data table header descriptions
ID_REF
VALUE normalized signal (against MammU6)

Data table
ID_REF VALUE
MammU6-4395470
RNU6B-4373381 9.162071
RNU48-4373383 2.9014347
RNU44-4373384 4.2827315
RNU43-4373375 7.8693295
RNU24-4373379 6.8036537
hsa-miR-99b-4373007 7.277807
hsa-miR-99b*-4395307 12.222866
hsa-miR-99a-4373008 3.9986038
hsa-miR-99a*-4395252 11.739376
hsa-miR-98-4373009 8.403986
hsa-miR-96-4373372 18.81215
hsa-miR-96*-4395251 19.212025
hsa-miR-95-4373011 11.278549
hsa-miR-944-4395300 19.212025
hsa-miR-9-4373285 17.227139
hsa-miR-943-4395299 19.212025
hsa-miR-942-4395298 14.586102
hsa-miR-941-4395294 13.599361
hsa-miR-939-4395293 13.086239

Total number of rows: 671

Table truncated, full table size 20 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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