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Sample GSM243020 Query DataSets for GSM243020
Status Public on Apr 10, 2008
Title ALL_10kXba_#4
Sample type genomic
Source name ALL blood/bone marrow
Organism Homo sapiens
Characteristics ALL patient
Treatment protocol Mononuclear cells were harvested from peripheral blood or bone marrow of patients with ALL at presentation and cryopreserved in liquid nitrogen.
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol DNA was prepared using standard proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Hybridization protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Scan protocol Affymetrix GeneChip scanner 3000-7G
Description SNP genotype data from ALL patient at diagnosis
Data processing GCOS, GTYPE. Gene calling algorithms MPALM and BRLLM, respectively.
Submission date Nov 14, 2007
Last update date Aug 14, 2011
Contact name Kajsa Paulsson
Organization name Cancer Research UK
Department Medical Oncology Centre
Street address John Vane Science Centre, Charterhouse Square
City London
ZIP/Postal code EC1M 6BQ
Country United Kingdom
Platform ID GPL2641
Series (1)
GSE9611 Adult and adolescent acute lymphoblastic leukemia

Data table header descriptions
VALUE Genotypes: AA, AB, BB, No Call

Data table
SNP_A-1513509 AB 0.780291
SNP_A-1518411 BB 0.104565
SNP_A-1511066 AA 0.108026
SNP_A-1517367 AB 0.273751
SNP_A-1512567 NoCall 0.816586
SNP_A-1519604 BB 0.149442
SNP_A-1507932 AB 0.046520
SNP_A-1519685 AB 0.472423
SNP_A-1516165 AB 0.093476
SNP_A-1514890 BB 0.191655
SNP_A-1507580 AB 0.142257
SNP_A-1510991 AB 0.347330
SNP_A-1516205 BB 0.136540
SNP_A-1512666 BB 0.416448
SNP_A-1512740 BB 0.085550
SNP_A-1512132 AA 0.057581
SNP_A-1516082 AA 0.085336
SNP_A-1511962 BB 0.131440
SNP_A-1515637 AA 0.104161
SNP_A-1518789 BB 0.165369

Total number of rows: 10204

Table truncated, full table size 259 Kbytes.

Supplementary file Size Download File type/resource
GSM243020.CEL.gz 2.7 Mb (ftp)(http) CEL
GSM243020.txt.gz 227.9 Kb (ftp)(http) TXT
Processed data included within Sample table

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