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Sample GSM243022 Query DataSets for GSM243022
Status Public on Apr 10, 2008
Title ALL_10kXba_#6
Sample type genomic
Source name ALL blood/bone marrow
Organism Homo sapiens
Characteristics ALL patient
Treatment protocol Mononuclear cells were harvested from peripheral blood or bone marrow of patients with ALL at presentation and cryopreserved in liquid nitrogen.
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol DNA was prepared using standard proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Hybridization protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Scan protocol Affymetrix GeneChip scanner 3000-7G
Description SNP genotype data from ALL patient at diagnosis
Data processing GCOS, GTYPE. Gene calling algorithms MPALM and BRLLM, respectively.
Submission date Nov 14, 2007
Last update date Aug 14, 2011
Contact name Kajsa Paulsson
Organization name Cancer Research UK
Department Medical Oncology Centre
Street address John Vane Science Centre, Charterhouse Square
City London
ZIP/Postal code EC1M 6BQ
Country United Kingdom
Platform ID GPL2641
Series (1)
GSE9611 Adult and adolescent acute lymphoblastic leukemia

Data table header descriptions
VALUE Genotypes: AA, AB, BB, No Call

Data table
SNP_A-1513509 BB 0.036967
SNP_A-1518411 AB 0.174245
SNP_A-1511066 AA 0.196096
SNP_A-1517367 AA 0.044443
SNP_A-1512567 BB 0.066851
SNP_A-1519604 AA 0.254711
SNP_A-1507932 BB 0.037943
SNP_A-1519685 AA 0.501742
SNP_A-1516165 AB 0.064056
SNP_A-1514890 BB 0.051059
SNP_A-1507580 BB 0.188235
SNP_A-1510991 AA 0.128506
SNP_A-1516205 AA 0.156319
SNP_A-1512666 BB 0.073659
SNP_A-1512740 BB 0.218064
SNP_A-1512132 AA 0.104486
SNP_A-1516082 AA 0.168447
SNP_A-1511962 BB 0.158922
SNP_A-1515637 AB 0.072713
SNP_A-1518789 AA 0.142333

Total number of rows: 10204

Table truncated, full table size 260 Kbytes.

Supplementary file Size Download File type/resource
GSM243022.CEL.gz 1.7 Mb (ftp)(http) CEL
GSM243022.txt.gz 227.8 Kb (ftp)(http) TXT
Processed data included within Sample table

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