GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM243034 Query DataSets for GSM243034
Status Public on Apr 10, 2008
Title ALL_10kXba_#18
Sample type genomic
Source name ALL blood/bone marrow
Organism Homo sapiens
Characteristics ALL patient
Treatment protocol Mononuclear cells were harvested from peripheral blood or bone marrow of patients with ALL at presentation and cryopreserved in liquid nitrogen.
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol DNA was prepared using standard proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Hybridization protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Scan protocol Affymetrix GeneChip scanner 3000-7G
Description SNP genotype data from ALL patient at diagnosis
Data processing GCOS, GTYPE. Gene calling algorithms MPALM and BRLLM, respectively.
Submission date Nov 14, 2007
Last update date Aug 14, 2011
Contact name Kajsa Paulsson
Organization name Cancer Research UK
Department Medical Oncology Centre
Street address John Vane Science Centre, Charterhouse Square
City London
ZIP/Postal code EC1M 6BQ
Country United Kingdom
Platform ID GPL2641
Series (1)
GSE9611 Adult and adolescent acute lymphoblastic leukemia

Data table header descriptions
VALUE Genotypes: AA, AB, BB, No Call

Data table
SNP_A-1513509 BB 0.095922
SNP_A-1518411 BB 0.052999
SNP_A-1511066 AB 0.361535
SNP_A-1517367 AB 0.443094
SNP_A-1512567 AB 0.499084
SNP_A-1519604 AA 0.112505
SNP_A-1507932 AB 0.033095
SNP_A-1519685 BB 0.204654
SNP_A-1516165 AB 0.103838
SNP_A-1514890 BB 0.049826
SNP_A-1507580 AB 0.380359
SNP_A-1510991 BB 0.074728
SNP_A-1516205 AA 0.062653
SNP_A-1512666 BB 0.000000
SNP_A-1512740 BB 0.121480
SNP_A-1512132 AA 0.144989
SNP_A-1516082 AB 0.064754
SNP_A-1511962 AB 0.390671
SNP_A-1515637 BB 0.064920
SNP_A-1518789 AA 0.421479

Total number of rows: 10204

Table truncated, full table size 260 Kbytes.

Supplementary file Size Download File type/resource
GSM243034.CEL.gz 1.7 Mb (ftp)(http) CEL
GSM243034.txt.gz 228.0 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap