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Sample GSM243036 Query DataSets for GSM243036
Status Public on Apr 10, 2008
Title ALL_10kXba_#20
Sample type genomic
Source name ALL blood/bone marrow
Organism Homo sapiens
Characteristics ALL patient
Treatment protocol Mononuclear cells were harvested from peripheral blood or bone marrow of patients with ALL at presentation and cryopreserved in liquid nitrogen.
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol DNA was prepared using standard proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Hybridization protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Scan protocol Affymetrix GeneChip scanner 3000-7G
Description SNP genotype data from ALL patient at diagnosis
Data processing GCOS, GTYPE. Gene calling algorithms MPALM and BRLLM, respectively.
Submission date Nov 14, 2007
Last update date Aug 14, 2011
Contact name Kajsa Paulsson
Organization name Cancer Research UK
Department Medical Oncology Centre
Street address John Vane Science Centre, Charterhouse Square
City London
ZIP/Postal code EC1M 6BQ
Country United Kingdom
Platform ID GPL2641
Series (1)
GSE9611 Adult and adolescent acute lymphoblastic leukemia

Data table header descriptions
VALUE Genotypes: AA, AB, BB, No Call

Data table
SNP_A-1513509 AB 0.628742
SNP_A-1518411 BB 0.195278
SNP_A-1511066 AB 0.574631
SNP_A-1517367 AB 0.113390
SNP_A-1512567 NoCall 0.884753
SNP_A-1519604 AB 0.076631
SNP_A-1507932 AB 0.339500
SNP_A-1519685 AB 0.460457
SNP_A-1516165 AA 0.000000
SNP_A-1514890 AB 0.076912
SNP_A-1507580 BB 0.022215
SNP_A-1510991 AB 0.180489
SNP_A-1516205 AA 0.135521
SNP_A-1512666 AA 0.036429
SNP_A-1512740 BB 0.256466
SNP_A-1512132 AA 0.109187
SNP_A-1516082 AB 0.234721
SNP_A-1511962 AB 0.408788
SNP_A-1515637 BB 0.067426
SNP_A-1518789 BB 0.058411

Total number of rows: 10204

Table truncated, full table size 260 Kbytes.

Supplementary file Size Download File type/resource
GSM243036.CEL.gz 1.5 Mb (ftp)(http) CEL
GSM243036.txt.gz 228.3 Kb (ftp)(http) TXT
Processed data included within Sample table

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