|
Status |
Public on Apr 10, 2008 |
Title |
ALL_10kXba_#22 |
Sample type |
genomic |
|
|
Source name |
ALL blood/bone marrow
|
Organism |
Homo sapiens |
Characteristics |
ALL patient
|
Treatment protocol |
Mononuclear cells were harvested from peripheral blood or bone marrow of patients with ALL at presentation and cryopreserved in liquid nitrogen.
|
Growth protocol |
Not applicable
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was prepared using standard proteinase K digestion and phenol/chloroform extraction
|
Label |
biotin
|
Label protocol |
Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
|
|
|
Hybridization protocol |
Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
|
Scan protocol |
Affymetrix GeneChip scanner 3000-7G
|
Description |
SNP genotype data from ALL patient at diagnosis
|
Data processing |
GCOS, GTYPE. Gene calling algorithms MPALM and BRLLM, respectively.
|
|
|
Submission date |
Nov 14, 2007 |
Last update date |
Aug 14, 2011 |
Contact name |
Kajsa Paulsson |
E-mail(s) |
kajsa.paulsson@cancer.org.uk
|
Organization name |
Cancer Research UK
|
Department |
Medical Oncology Centre
|
Street address |
John Vane Science Centre, Charterhouse Square
|
City |
London |
ZIP/Postal code |
EC1M 6BQ |
Country |
United Kingdom |
|
|
Platform ID |
GPL2641 |
Series (1) |
GSE9611 |
Adult and adolescent acute lymphoblastic leukemia |
|