|
| Status |
Public on Apr 10, 2008 |
| Title |
ALL_250kNsp_#1 |
| Sample type |
genomic |
| |
|
| Source name |
ALL blood/bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
ALL patient
|
| Treatment protocol |
Mononuclear cells were harvested from peripheral blood or bone marrow of patients with ALL at presentation and cryopreserved in liquid nitrogen.
|
| Growth protocol |
Not applicable
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was prepared using standard proteinase K digestion and phenol/chloroform extraction
|
| Label |
biotin
|
| Label protocol |
Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
|
| |
|
| Hybridization protocol |
Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
|
| Scan protocol |
Affymetrix GeneChip scanner 3000-7G
|
| Description |
SNP genotype data from ALL patient at diagnosis
|
| Data processing |
GCOS, GTYPE. Gene calling algorithms MPALM and BRLLM, respectively.
|
| |
|
| Submission date |
Nov 14, 2007 |
| Last update date |
Aug 14, 2011 |
| Contact name |
Kajsa Paulsson |
| E-mail(s) |
kajsa.paulsson@cancer.org.uk
|
| Organization name |
Cancer Research UK
|
| Department |
Medical Oncology Centre
|
| Street address |
John Vane Science Centre, Charterhouse Square
|
| City |
London |
| ZIP/Postal code |
EC1M 6BQ |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL3718 |
| Series (1) |
| GSE9611 |
Adult and adolescent acute lymphoblastic leukemia |
|
