|
| Status |
Public on Aug 28, 2017 |
| Title |
D6IMQlEpdSC_R1_ATAC-seq |
| Sample type |
SRA |
| |
|
| Source name |
Skin
|
| Organism |
Mus musculus |
| Characteristics |
Sex: female
strain: C57BL/6
cell type: adult skin epithelia
sort markers: Integrin A6+, B1+ SCa1+ CD34-
treatment: topical imiquimod for 6 days
|
| Treatment protocol |
postnatal day 60 mice were treated with topical imiquimod for 6 days
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Cells were FACS sorted according to characteristics: sort markers, and Nuclei were extracted and genomic DNA was transposed per protocl outlined in doi:10.1038/nmeth.2690
Nextera DNA Library Preparation Kit
|
| |
|
| Library strategy |
ATAC-seq |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
Sample 19
PCR amplified library from genomic DNA
|
| Data processing |
Reads were aligned to the reference mouse genome (mm10) with bowtie as previously described (Buenrostro 2013).
Genome_build: mm10
Supplementary_files_format_and_content: .bw
|
| |
|
| Submission date |
Dec 28, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Nicholas Gomez |
| Organization name |
Rockefeller University
|
| Street address |
1230 York Ave
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platform ID |
GPL21103 |
| Series (1) |
| GSE92967 |
Inflammatory Memory in Epidermal Stem Cells Accelerates Tissue Damage Responses |
|
| Relations |
| BioSample |
SAMN06187809 |
| SRA |
SRX2448174 |
