GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM24441
Query DataSets for GSM24441
Status
Public on Jun 11, 2004
Title
C. elegans adult (fer-15, 1 day)
Sample type
SAGE
Anchor
NlaIII
Tag Count
94130
Tag Length
10
Source name
whole adult worms (fer-15, 1 day)
Organism
Caenorhabditis elegans
Extracted molecule
total RNA
Description
Libraries were constructed from total RNA from 1 day old worms (fer-15); 14 bp tags. Tagging enzyme: BsmF1.
Linker sequences and duplicate ditags are excluded.
Keywords = SAGE
Keywords = ageing
Lot batch =
Submission date
May 28, 2004
Last update date
Nov 19, 2008
Contact name
Kim Wong
E-mail(s)
kwong@bcgsc.ca
Phone
604-877-6000 ext.3265
Fax
604-876-3561
Organization name
British Columbia Cancer Agency
Lab
British Columbia Genome Sciences Centre
Street address
600 West 10th Avenue
City
Vancouver
State/province
BC
ZIP/Postal code
V5Z 4E6
Country
Canada
Platform ID
GPL1267
Series (1)
GSE1447
C. elegans SAGE
Data table header descriptions
TAG
10 bp tag sequence;
COUNT
Absolute tag count
TPM
tags per million
Data table
TAG
COUNT
TPM
GAAACTCTTG
2
21.25
CACTTGTGAA
1
10.62
TGCTCTCTCA
1
10.62
GCTTTTGAAG
1
10.62
TTGTTACGAT
1
10.62
ATTTTCGATA
1
10.62
AATAAACCAA
1
10.62
ATGGACTCCC
1
10.62
TATGGATGTA
2
21.25
CTATTCGGAA
4
42.49
AATAAACCAG
1
10.62
CAGTTCGCTG
1
10.62
GTTCCATATG
2
21.25
GGATACTCAA
1
10.62
GGATTTCTGA
1
10.62
GACGTGAAGG
1
10.62
GTGAATAAAC
1
10.62
TGACATTGCT
1
10.62
TATCAAGGTG
1
10.62
CTGATTAATT
1
10.62
Total number of rows:
18831
Table truncated, full table size
352 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
