|
Status |
Public on Jan 23, 2017 |
Title |
Balbc_p53null_T1_sorted_shRor2_3 |
Sample type |
RNA |
|
|
Channel 1 |
Source name |
Whole Mouse Reference RNA
|
Organism |
Mus musculus |
Characteristics |
sample type: Reference RNA from C57Bl6/J and 129 male and female Day1 pups
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA isolated using a Qiagen RNeasy Kit
|
Label |
Cy3
|
Label protocol |
described in Herschkowitz et al., 2007, Genome Biology, 8(5):R76
|
|
|
Channel 2 |
Source name |
Balbc_p53null_T1_sorted_shRor2_3
|
Organism |
Mus musculus |
Characteristics |
sample type: P53null T1 strain: Balbc lentivirus: shRor2
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA isolated using a Qiagen RNeasy Kit
|
Label |
Cy5
|
Label protocol |
described in Herschkowitz et al., 2007, Genome Biology, 8(5):R76
|
|
|
|
Hybridization protocol |
described in Herschkowitz et al., 2007, Genome Biology, 8(5):R76
|
Scan protocol |
Fluorescent array images were collected for both Cy3 and Cy5 with an Agilent scanner and image intensity data were extracted and analyzed with Agilent Feature Extraction software
|
Description |
Samples obtained from Rosen Lab
|
Data processing |
Data for both channels were Lowess-normalized and then the log(2) ratio was taken
|
|
|
Submission date |
Jan 18, 2017 |
Last update date |
Jan 23, 2017 |
Contact name |
Jeffrey Rosen |
E-mail(s) |
jrosen@bcm.edu
|
Organization name |
Baylor College of Medicine
|
Department |
Department of Molecular and Cellular Biology
|
Street address |
One Baylor Plaza M638
|
City |
Houston |
State/province |
TX |
ZIP/Postal code |
77030 |
Country |
USA |
|
|
Platform ID |
GPL11383 |
Series (1) |
GSE93815 |
Cell fate and adhesion dynamics rely on Ror2-mediated alternative Wnt signaling during tumor progression |
|