|
| Status |
Public on Jan 23, 2017 |
| Title |
Balbc_p53null_T2_sorted_shRor2_1 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Whole Mouse Reference RNA
|
| Organism |
Mus musculus |
| Characteristics |
sample type: Reference RNA from C57Bl6/J and 129 male and female Day1 pups
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA isolated using a Qiagen RNeasy Kit
|
| Label |
Cy3
|
| Label protocol |
described in Herschkowitz et al., 2007, Genome Biology, 8(5):R76
|
| |
|
| Channel 2 |
| Source name |
Balbc_p53null_T2_sorted_shRor2_1
|
| Organism |
Mus musculus |
| Characteristics |
sample type: P53null T2
strain: Balbc
lentivirus: shRor2
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA isolated using a Qiagen RNeasy Kit
|
| Label |
Cy5
|
| Label protocol |
described in Herschkowitz et al., 2007, Genome Biology, 8(5):R76
|
| |
|
| |
| Hybridization protocol |
described in Herschkowitz et al., 2007, Genome Biology, 8(5):R76
|
| Scan protocol |
Fluorescent array images were collected for both Cy3 and Cy5 with an Agilent scanner and image intensity data were extracted and analyzed with Agilent Feature Extraction software
|
| Description |
Samples obtained from Rosen Lab
|
| Data processing |
Data for both channels were Lowess-normalized and then the log(2) ratio was taken
|
| |
|
| Submission date |
Jan 18, 2017 |
| Last update date |
Jan 23, 2017 |
| Contact name |
Jeffrey Rosen |
| E-mail(s) |
jrosen@bcm.edu
|
| Organization name |
Baylor College of Medicine
|
| Department |
Department of Molecular and Cellular Biology
|
| Street address |
One Baylor Plaza M638
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL11383 |
| Series (1) |
| GSE93815 |
Cell fate and adhesion dynamics rely on Ror2-mediated alternative Wnt signaling during tumor progression |
|
