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Sample GSM2462932 Query DataSets for GSM2462932
Status Public on Jan 23, 2017
Title Balbc_p53null_2225L_sorted_shRor2_3
Sample type RNA
 
Channel 1
Source name Whole Mouse Reference RNA
Organism Mus musculus
Characteristics sample type: Reference RNA from C57Bl6/J and 129 male and female Day1 pups
Extracted molecule total RNA
Extraction protocol Total RNA isolated using a Qiagen RNeasy Kit
Label Cy3
Label protocol described in Herschkowitz et al., 2007, Genome Biology, 8(5):R76
 
Channel 2
Source name Balbc_p53null_2225L_sorted_shRor2_3
Organism Mus musculus
Characteristics sample type: P53null 2225L
strain: Balbc
lentivirus: shRor2
Extracted molecule total RNA
Extraction protocol Total RNA isolated using a Qiagen RNeasy Kit
Label Cy5
Label protocol described in Herschkowitz et al., 2007, Genome Biology, 8(5):R76
 
 
Hybridization protocol described in Herschkowitz et al., 2007, Genome Biology, 8(5):R76
Scan protocol Fluorescent array images were collected for both Cy3 and Cy5 with an Agilent scanner and image intensity data were extracted and analyzed with Agilent Feature Extraction software
Description Samples obtained from Rosen Lab
Data processing Data for both channels were Lowess-normalized and then the log(2) ratio was taken
 
Submission date Jan 18, 2017
Last update date Jan 23, 2017
Contact name Jeffrey Rosen
E-mail(s) jrosen@bcm.edu
Organization name Baylor College of Medicine
Department Department of Molecular and Cellular Biology
Street address One Baylor Plaza M638
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL11383
Series (1)
GSE93815 Cell fate and adhesion dynamics rely on Ror2-mediated alternative Wnt signaling during tumor progression

Data table header descriptions
ID_REF
VALUE normalized log(2) ratio (Cy5/Cy3) representing test/reference

Data table
ID_REF VALUE
1 -0.1
2 -0.639
3 0.218
4 0.438
5 0.378
6 0.869
7 0.565
8 0.844
9 0.468
10 0.148
11 0.045
12 0.344
13 -0.104
14 0.525
15 0.569
16 -0.096
17 0.706
18 -0.342
19 0.236
20 0.914

Total number of rows: 180880

Table truncated, full table size 2177 Kbytes.




Supplementary file Size Download File type/resource
GSM2462932_88088.txt.gz 28.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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