|
Status |
Public on Apr 07, 2008 |
Title |
PAO1 in MMP supplemented with glutamate and agmatine by Lu |
Sample type |
RNA |
|
|
Source name |
Aerobic batch cultures of P. aeruginosa wild type PAO1
|
Organism |
Pseudomonas aeruginosa |
Characteristics |
Wild type PAO1 strain cultured in MMP supplemented with glutamate and agmatine by Lu
|
Biomaterial provider |
Dr Chung-Dar Lu laboratory, Department of Biology, GSU
|
Treatment protocol |
P. aeruginosa PAO1 was grown in minimal medium P in the presence of L-glutamate with the addition of agmatine at 20 mM.
|
Growth protocol |
P. aeruginosa PAO1 was grown aerobically in minimal medium P with 350 rpm shaking at 37C. Cells were harvested when the optical density at 600 nm reached 0.5~0.6 by centrifugation for 5 minutes at 4C.
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA samples were isolated by RNeasy purification kit following instructions of the manufacturer (Qiagen). Reverse transcription for cDNA synthesis and fragmentation by DNase I treatment were performed according to the instructions of GeneChip manufacturer (Affymetrix).
|
Label |
biotin
|
Label protocol |
standard Affymetrix procedures
|
|
|
Hybridization protocol |
standard Affymetrix procedures
|
Scan protocol |
standard Affymetrix procedures
|
Description |
wild type PAO1
|
Data processing |
Affymetrix Microarray Suite version 5.0. Chip target intensity is normalized to 500.
|
|
|
Submission date |
Dec 17, 2007 |
Last update date |
Apr 25, 2011 |
Contact name |
Han Ting Chou |
Organization name |
Georgia State University
|
Department |
Biology
|
Street address |
1 University Park Drive
|
City |
Atlanta |
State/province |
GA |
ZIP/Postal code |
30303 |
Country |
USA |
|
|
Platform ID |
GPL84 |
Series (1) |
GSE9926 |
Transcriptome Analysis of Agmatine and Putrescine Catabolism in Pseudomonas aeruginosa PAO1 |
|