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Status |
Public on Feb 18, 2019 |
Title |
WT-vehicle_1 |
Sample type |
SRA |
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Source name |
Left ventricle
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Organism |
Mus musculus |
Characteristics |
genotype: Wild type drug treatment status: Vehicle treated tissue: Left ventricle
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Extracted molecule |
polyA RNA |
Extraction protocol |
RNA was extracted from mice left ventricle with a Qiagen RNEasy kit RNA libraries were prepared for sequencing using standard Illumina protocols
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 3000 |
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Description |
sample name: 3686-JW-1
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Data processing |
alignment with STAR v 2.5.2b, controlling for unannotated, non-canonical and rare junctions read count generation during STAR alignment using –quantmode GeneCounts option that works like HTSeq-Count in default mode Genome_build: GRCm38 Supplementary_files_format_and_content: txt files, raw read counts output from STAR alignment using option -–quantmode GeneCounts
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Submission date |
Mar 14, 2017 |
Last update date |
May 15, 2019 |
Contact name |
James West |
E-mail(s) |
j.west@vanderbilt.edu
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Organization name |
Vanderbilt University
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Department |
Medicine
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Lab |
Allergy, Pulmonary and Critical Care
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Street address |
4200 E 9TH Ave, Box B133
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City |
Nashville |
State/province |
TN |
ZIP/Postal code |
37201 |
Country |
USA |
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Platform ID |
GPL21493 |
Series (1) |
GSE96598 |
Expression pattern in dSG knockout mutant mice and effect of treatment with ifetroban |
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Relations |
BioSample |
SAMN06600799 |
SRA |
SRX2639327 |
Supplementary file |
Size |
Download |
File type/resource |
GSM2536383_3686-JW-1ReadsPerGene.out.tab.gz |
267.9 Kb |
(ftp)(http) |
TAB |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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