|
Status |
Public on Mar 22, 2009 |
Title |
SQ20B Go6976 12hr 2 |
Sample type |
other |
|
|
Channel 1 |
Source name |
12hr 2
|
Organism |
Homo sapiens |
Characteristics |
SQ20B cells 12hr 100nm Gö6976
|
Treatment protocol |
control, 12 or 24hr 100nm Gö6976 exposure
|
Growth protocol |
SQ20B (5 x 10e6) tumor cells were injected into the right hind limbs of female athymic nude mice
|
Extracted molecule |
other |
Extraction protocol |
PureLink miRNA Isolation Kit (Invitrogen, Carlsbad, CA)
|
Label |
Cy3
|
Label protocol |
mirVana miRNA labeling kit (Ambion, Austin, TX)
|
|
|
Channel 2 |
Source name |
0hr
|
Organism |
Homo sapiens |
Characteristics |
SQ20B cells control
|
Treatment protocol |
control, 12 or 24hr 100nm Gö6976 exposure
|
Growth protocol |
SQ20B (5 x 10e6) tumor cells were injected into the right hind limbs of female athymic nude mice
|
Extracted molecule |
other |
Extraction protocol |
PureLink miRNA Isolation Kit (Invitrogen, Carlsbad, CA)
|
Label |
Cy5
|
Label protocol |
mirVana miRNA labeling kit (Ambion, Austin, TX)
|
|
|
|
Hybridization protocol |
manufacturer's specification
|
Scan protocol |
scanned using Axon 4000B and image analysis using GenePix Pro 4.0
|
Description |
6 treated samples across two time points hybridized to paired time 0, untreated controls
|
Data processing |
loess normalization (R - Bioconductor 'limma' package)
|
|
|
Submission date |
Jan 28, 2008 |
Last update date |
Mar 22, 2009 |
Contact name |
Christine H. Chung |
E-mail(s) |
christine.chung@vanderbilt.edu
|
Phone |
615-322-4967
|
Fax |
615343-7602
|
Organization name |
Vanderbilt University
|
Department |
Internal Medicine
|
Lab |
Chung
|
Street address |
777 PRB
|
City |
Nashville |
State/province |
TN |
ZIP/Postal code |
37232-6307 |
Country |
USA |
|
|
Platform ID |
GPL6429 |
Series (1) |
GSE10301 |
Protein Kinase C Alpha Promotes Tumor Growth by Initiating a Feed-forward Network Involving miR-15a and Cyclin E |
|