NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM261936 Query DataSets for GSM261936
Status Public on May 26, 2009
Title PA-Isolate M26-1
Sample type RNA
 
Source name liquid culture
Organism Pseudomonas aeruginosa
Characteristics PA-Isolate M26-1 from patient M
mutator
Isolate recovered on Sep 2001
Treatment protocol n/a
Growth protocol Luria Bertani/300rpm/OD600nm ~3.5
Extracted molecule total RNA
Extraction protocol TRIzol (Invitrogen) according to the manufacturer's instructions.
Label biotin
Label protocol Affymetrix prokaryotic standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description Gene expression data from P. aeruginosa cystic fibrosis isolate M22
Data processing RMA
 
Submission date Feb 01, 2008
Last update date May 26, 2009
Contact name michael Hogardt
E-mail(s) hogardt@mvp.uni-muenchen.de
Phone +49-89-218078202
Fax +49-89-218078294
Organization name Max von Pettenkofer-Institut
Department Bacteriology
Lab CF-Laboratory
Street address Marchioninistreet 17
City Munich
State/province Bavaria
ZIP/Postal code 81377
Country Germany
 
Platform ID GPL84
Series (1)
GSE10362 Expression data from sequential P. aeruginosa cystic fibrosis (CF) isolates

Data table header descriptions
ID_REF
VALUE RMA calculated signal intensity

Data table
ID_REF VALUE
AFFX-Athal_GAPDH_at 9.74
AFFX-Athal_actin_at 9.62
AFFX-Athal_ubq_at 9.72
AFFX-Bsubtilis_dapB_at 212.64
AFFX-Bsubtilis_lys_at 56.13
AFFX-Bsubtilis_pheB_at 251.57
AFFX-Bsubtilis_thrC_at 468.22
AFFX-Bsubtilis_trpD_at 28.02
AFFX-YEL002C_WPB1_at 9.48
AFFX-YEL018W_at 9.33
AFFX-YEL024W_RIP1_at 9.72
AFFX-YER022W_SRB4_at 9.4
AFFX-YER148W_SPT15_at 9.49
AFFX-YFL039C_ACT1_at 9.67
PA0001_dnaA_at 123.01
PA0002_dnaN_at 350.32
PA0003_recF_at 80.02
PA0004_gyrB_at 164.65
PA0005_at 53.24
PA0006_at 40.03

Total number of rows: 5900

Table truncated, full table size 103 Kbytes.




Supplementary file Size Download File type/resource
GSM261936.CEL.gz 1.0 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap