NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM26677 Query DataSets for GSM26677
Status Public on Jul 17, 2004
Title -Gly20shm2-1 (12443942deltaSHM2-gly20-2march5,03)
Sample type RNA
 
Channel 1
Source name Time course t=0 sample of strain Y02669 grown on minimal + 10 mM glycine
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Time course 20 min sample of strain Y02669 after cells were filtered and resuspended in minimal -glycine
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description Comparison of cDNA made from mRNA of deletion set strain Y02669 grown with glycine to cDNA made from mRNA from the same strain harvested 20 min after resuspension in minimal medium lacking glycine.

The array slides were scanned with GenePix 4000B (Axon Instruments). Spots were found and analyzed with Gene Pix Pro 3.0 analysis software.
 
Submission date Jul 09, 2004
Last update date May 27, 2005
Contact name Andy L Bognar
E-mail(s) a.bognar@utoronto.ca
Phone (416) 978-5854
URL http://lambda.med.utoronto.ca/Bognar/
Organization name University of Toronto
Department Medical Genetics and Biology
Lab Bognar Lab
Street address 1 King's College Circle
City Toronto
State/province Ontario
ZIP/Postal code M5S 1A8
Country Canada
 
Platform ID GPL1336
Series (1)
GSE1554 Time course of glycine addition or withdrawal

Data table header descriptions
ID_REF
F635_Median Sample 1 Median Intensity
B635_Median Sample 1 Median Background
F532_Median Sample 2 Median Intensity
B532_Median Sample 2 Median Background
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Ratio of Median Intensities

Data table
ID_REF F635_Median B635_Median F532_Median B532_Median VALUE PRE_VALUE
1 8519 406 15215 389 -0.8703873 0.547
2 6400 418 10590 407 -0.7685683 0.587
3 388 406 745 381 -0.049
4 536 442 831 413 -2.1520033 0.225
5 5705 453 8544 424 -0.6281623 0.647
6 5653 460 7884 430 -0.5207693 0.697
7 5689 423 10076 393 -0.8783213 0.544
8 5374 419 10470 417 -1.0203403 0.493
9 37408 582 55528 474 -0.5799223 0.669
10 35551 684 52910 569 -0.5864063 0.666
11 20089 727 29277 669 -0.5627723 0.677
12 21212 549 29450 551 -0.4839853 0.715
13 37610 510 32767 453 0.1991233 1.148
14 30426 494 32589 422 -0.1031473 0.931
15 42561 523 36316 468 0.2302033 1.173
16 50823 604 49893 534 0.0243203 1.017
17 3028 615 4949 532 -0.8730273 0.546
18 2707 711 4868 666 -1.0740013 0.475
19 65535 875 65535 1024 0.0028833 1.002
20 65535 742 65535 725 0.0000003 1

Total number of rows: 12800

Table truncated, full table size 518 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap