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Status |
Public on Oct 21, 2017 |
Title |
GH146-GFP [IL7051-703-515] |
Sample type |
SRA |
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Source name |
olfactory projection neuron
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Organism |
Drosophila melanogaster |
Characteristics |
genotype: GH146-GFP cell type: olfactory projection neuron number of cells: 1
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Extracted molecule |
total RNA |
Extraction protocol |
Modified SMART-seq2 (Li et al. 2017)
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Library strategy |
OTHER |
Library source |
transcriptomic |
Library selection |
other |
Instrument model |
NextSeq 550 |
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Description |
Single cell processed data files: df_libs.csv, htseq.tab, STAR.tab
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Data processing |
Library strategy: 5’ RACE RNA-seq alignment (STAR 2.4.2a, ENCODE standard options, except --outFilterScoreMinOverLread 0.4 --outFilterMatchNminOverLread 0.4 -- outFilterMismatchNmax 999 --outFilterMismatchNoverLmax 0.04) gene count (HTSeq-count 0.7.1, default options, except -m intersection-strict) Genome_build: Dmel r6.10 Supplementary_files_format_and_content: htseq.tab (gene counts), STAR.tab (summary of mapping results), df_libs.csv (sample information)
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Submission date |
Jun 15, 2017 |
Last update date |
May 15, 2019 |
Contact name |
Felix Horns |
E-mail(s) |
rfhorns@stanford.edu
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Organization name |
Stanford University
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Department |
Bioengineering
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Lab |
Quake
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Street address |
Clark Center E300, Quake Lab
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City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305 |
Country |
USA |
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Platform ID |
GPL22106 |
Series (1) |
GSE100058 |
Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-cell RNA Sequencing |
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Relations |
BioSample |
SAMN07245191 |
SRA |
SRX2920225 |
Supplementary data files not provided |
SRA Run Selector![Help](/coreweb/images/long_help4.gif) |
Raw data are available in SRA |
Processed data are available on Series record |
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