 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Oct 21, 2017 |
| Title |
GH146-GFP [IL7051-718-511] |
| Sample type |
SRA |
| |
|
| Source name |
olfactory projection neuron
|
| Organism |
Drosophila melanogaster |
| Characteristics |
genotype: GH146-GFP
cell type: olfactory projection neuron
number of cells: 1
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Modified SMART-seq2 (Li et al. 2017)
|
| |
|
| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
NextSeq 550 |
| |
|
| Description |
Single cell
processed data files: df_libs.csv, htseq.tab, STAR.tab
|
| Data processing |
Library strategy: 5’ RACE RNA-seq
alignment (STAR 2.4.2a, ENCODE standard options, except --outFilterScoreMinOverLread 0.4 --outFilterMatchNminOverLread 0.4 -- outFilterMismatchNmax 999 --outFilterMismatchNoverLmax 0.04)
gene count (HTSeq-count 0.7.1, default options, except -m intersection-strict)
Genome_build: Dmel r6.10
Supplementary_files_format_and_content: htseq.tab (gene counts), STAR.tab (summary of mapping results), df_libs.csv (sample information)
|
| |
|
| Submission date |
Jun 15, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Felix Horns |
| E-mail(s) |
rfhorns@stanford.edu
|
| Organization name |
Stanford University
|
| Department |
Bioengineering
|
| Lab |
Quake
|
| Street address |
Clark Center E300, Quake Lab
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platform ID |
GPL22106 |
| Series (1) |
| GSE100058 |
Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-cell RNA Sequencing |
|
| Relations |
| BioSample |
SAMN07244570 |
| SRA |
SRX2920500 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
