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Sample GSM267086 Query DataSets for GSM267086
Status Public on Feb 25, 2008
Title Control leaves vs Stressed leaves_1d_rep2_A
Sample type RNA
 
Channel 1
Source name maize DH4866 leaves
Organism Zea mays
Characteristics maize DH4866 leaves
Age: at the heading stage
Tissue: maize flag leaves
Treatment protocol The control plants were fully watered.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated as McCarty (1986) described.
Label Cy5
Label protocol Using SuperScriptâ„¢ Indirect cDNA Labeling System (L1014-02)
 
Channel 2
Source name maize DH4866 leaves
Organism Zea mays
Characteristics maize DH4866 leaves
Age: at the heading stage
Tissue: maize flag leaves
Treatment protocol The plants were subjected to drought stress by withholding water for 24 h (1 day).
Extracted molecule total RNA
Extraction protocol Total RNA was isolated as McCarty (1986) described.
Label cy3
Label protocol Using SuperScriptâ„¢ Indirect cDNA Labeling System (L1014-02)
 
 
Hybridization protocol according to the protocols at the website of the Maize Oligonucleotide Array Project.
Scan protocol Scanned on an GenePix 4000B scanner.
Images were quantified using GENEPIX 6.0 software.
Description na
Data processing Global normalized, background subtracted data. VALUE column represents normalized, log2(test/reference) ratios.
 
Submission date Feb 21, 2008
Last update date Feb 25, 2008
Contact name juren zhang
E-mail(s) jrzhang@sdu.edu.cn
Organization name shandong university
Street address shanda nanlv 27
City jinan
ZIP/Postal code 250100
Country China
 
Platform ID GPL5439
Series (1)
GSE10596 Differential gene expression analysis of maize leaf at heading stage in response to water-deficit stress

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (test/ref)
INV_VALUE normalized log2 ratio (Cy5/Cy3)

Data table
ID_REF VALUE INV_VALUE
422946 2.202 -2.202
422947 0.698 -0.698
422948 0.03 -0.03
422949 -0.144 0.144
422950 0.329 -0.329
422951 2.731 -2.731
422952 2.056 -2.056
422953 -0.744 0.744
422954 -0.478 0.478
422955 0.371 -0.371
422956 -0.991 0.991
422957 0.034 -0.034
422958 -1.024 1.024
422959 0 0
422960 0.888 -0.888
422961 0.557 -0.557
422962 2.025 -2.025
422963 -0.146 0.146
422964 0.057 -0.057
422965 0 0

Total number of rows: 32448

Table truncated, full table size 610 Kbytes.




Supplementary file Size Download File type/resource
GSM267086.gpr.gz 4.2 Mb (ftp)(http) GPR
Processed data included within Sample table

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